Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01542 ATGGGGGATTTCATCTTCTCCTTCAAGAGACAGGAACATGCGCACCAGAGAGCAAAACACAGCAAGAAGAGGTTAACTGAGGACCAGGTTACTACTCTTGAGAAATGCTTTGCTTCCAACATGAAGCTTGAACCGGAGCAGAAATTCCACCTTGCAAACCAACTTGGTGTTCCTCCAAGACAAGTTGCCATTTGGTACCAGAACAAAAGGGCACGCTGGAAGACTCAGAGCCTTGAGGTGGACCACAGTGTGCTTCAGGCAAAGCTGGAGAATGTGATGGCTGAAAAGAAGCAGCTAGAGAAAGATGTGGAAAGACTCAAAGCTGAGCTGAAGAAAGCCCAAGAGATGATGCTGATTAGCGATGTGGTCAAAGGTGGAGAAAATAGTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGGTTCTTCTTGTGAGTTTTCAACTTCTTTTGAAGAGCGAGGGAGTTCAGGGGTGGTGCTTGATGACGATACTCACCACCATGAGTGTTGGCAAAGTGGTGAGGTTATGCAGGTTGAGGAGCTCTATGCTTACTTCATGGGTGCAAATTATGGGTCAGGCTTGCATGAGAAAAGGGCATAA 627 0.4226 MGDFIFSFKRQEHAHQRAKHSKKRLTEDQVTTLEKCFASNMKLEPEQKFHLANQLGVPPRQVAIWYQNKRARWKTQSLEVDHSVLQAKLENVMAEKKQLEKDVERLKAELKKAQEMMLISDVVKGGENSNNNNNNNNNNNNNNNNNNNNGSSCEFSTSFEERGSSGVVLDDDTHHHECWQSGEVMQVEELYAYFMGANYGSGLHEKRA* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01542 208 Coils Coil 82 116 - -
Lapu11g01542 208 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Lapu11g01542 208 FunFam Homeobox-leucine zipper protein ATHB-52 12 78 - -
Lapu11g01542 208 SMART HOX_1 18 80 IPR001356 GO:0003677
Lapu11g01542 208 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 15 157 IPR045224 GO:0003700
Lapu11g01542 208 Pfam Homeodomain 20 74 IPR001356 GO:0003677
Lapu11g01542 208 SUPERFAMILY Homeodomain-like 18 85 IPR009057 -
Lapu11g01542 208 Gene3D - 13 81 - -
Lapu11g01542 208 ProSitePatterns 'Homeobox' domain signature. 51 74 IPR017970 GO:0000981|GO:0006355
Lapu11g01542 208 MobiDBLite consensus disorder prediction 124 158 - -
Lapu11g01542 208 CDD homeodomain 19 77 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01542 Lapu-Chr11 20703709 20704339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01542 12 202 Homeobox Transcription Factor Family AT5G53980 39.267 1.04e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lapu11g01542 Homeodomain 4.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01542 - - gsj:114378167 317.39