Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01492 ATGGATCTTCTGTGGAGCGCTTATTCGAATTCCTCAGACGACGAAGAACAACCTAAACGACAGAGACTATCTCTCTCTTCCACTAATCGACCAAAACAACATCTTCCTTCGCCTTCTCCGCCTTTATTCCACCAAATGCAACCTCCCATTCCCGGAAGCTACATTTCCAAACGACAACGCGCTCTGATGGGTCCCTCCCCTGCACCTCTTCCTGACCCTGTTCTTGTTCCTTCTCCGTTCATGCAACGAGGTAGTATCTCAGTTGCTGATATAGACCATAATATTTTGTCATTGTTGAAAAGTAAAGCAAAGGGTCATCACAGCCAGAACTTGATACCTGAGAAGCTATCTGCAACTTTGTGCGGCCATACTAATGCTGTCAATGCTATACATTGGTCATCAACTCATGCTCACCTCCTTGCATCTGCTGGGATGGATCAAACAATTTGCGTATGGAATGTATGGAGCAGAGATCAGAAGAAAGCATGTGTGTTAAACTTCCACAATGCAGCAGTCAAAGATGTGAAATGGTCTCAGCAAGGGCACTTTCTACTTTCTTGTGGATATGATTGCACATCAAGGTTGGTCGATGTTGAAAAGGGATTGGAGACTCAAGTTTTTAGAGAAGATCAAATTGTTGGAGTTATAAAGTTCCATCCAGACAATTCAAATATATTCCTTTCTGGAGGTTCAAAGGGCCATATCAAACTATGGGATGTCAGAACAGGCAATGTAGTGCATAATTATAATCGAAATTTAGGTCCGATTCTCGATCTTGAGTTCACAATGAACGGGAAGCAATTCATTTCTTCTTGTGATGTATCCCAGAGTAATGTCAGTGAGAACGCTATTATTGTTTGGGATGTGTCGAGGGAGGTACCATTGTCTAATCAGGTTTATGCAGAAGCTTATACATGTCCTTGCGTGAGGCTCCACCCATTTGATTCAATTTTTGTTGCCCAGTCAAATGGAAATTATGTTGCAATCTTTACTACCACCCCACCTTATAGACTCAACAAATATAAGCGATATGAGGGCCATGTGATCTCTGGGTTCCCAATCAAGTGTAATTTCAGCTTGGATGGGAAAAAACTCGCTTCTGGCTCTTCTGATGGTTCTATCTACCTTTATGATTATCATTCATCCAAAGTTGTGAAGAAAATCAAGGCCCATGACCAAGCATGTATAGATGTTGCCTTCCACCCCATTATACCTAATGTTATTGCATCATGCTCGTGGGATGGAAGTATTTTGGTATTTGAA 1263 0.4188 MDLLWSAYSNSSDDEEQPKRQRLSLSSTNRPKQHLPSPSPPLFHQMQPPIPGSYISKRQRALMGPSPAPLPDPVLVPSPFMQRGSISVADIDHNILSLLKSKAKGHHSQNLIPEKLSATLCGHTNAVNAIHWSSTHAHLLASAGMDQTICVWNVWSRDQKKACVLNFHNAAVKDVKWSQQGHFLLSCGYDCTSRLVDVEKGLETQVFREDQIVGVIKFHPDNSNIFLSGGSKGHIKLWDVRTGNVVHNYNRNLGPILDLEFTMNGKQFISSCDVSQSNVSENAIIVWDVSREVPLSNQVYAEAYTCPCVRLHPFDSIFVAQSNGNYVAIFTTTPPYRLNKYKRYEGHVISGFPIKCNFSLDGKKLASGSSDGSIYLYDYHSSKVVKKIKAHDQACIDVAFHPIIPNVIASCSWDGSILVFE 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01492 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 120 162 IPR001680 GO:0005515
Lapu11g01492 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 358 387 IPR001680 GO:0005515
Lapu11g01492 421 Gene3D - 96 421 IPR015943 GO:0005515
Lapu11g01492 421 SMART WD40_4 381 421 IPR001680 GO:0005515
Lapu11g01492 421 SMART WD40_4 158 197 IPR001680 GO:0005515
Lapu11g01492 421 SMART WD40_4 200 239 IPR001680 GO:0005515
Lapu11g01492 421 SMART WD40_4 337 378 IPR001680 GO:0005515
Lapu11g01492 421 SMART WD40_4 113 153 IPR001680 GO:0005515
Lapu11g01492 421 SMART WD40_4 242 288 IPR001680 GO:0005515
Lapu11g01492 421 SUPERFAMILY WD40 repeat-like 110 420 IPR036322 GO:0005515
Lapu11g01492 421 CDD WD40 110 421 - -
Lapu11g01492 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 206 248 IPR001680 GO:0005515
Lapu11g01492 421 MobiDBLite consensus disorder prediction 1 50 - -
Lapu11g01492 421 ProSitePatterns Trp-Asp (WD) repeats signature. 140 154 IPR019775 -
Lapu11g01492 421 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 20 421 - -
Lapu11g01492 421 Pfam WD domain, G-beta repeat 216 239 IPR001680 GO:0005515
Lapu11g01492 421 Pfam WD domain, G-beta repeat 164 195 IPR001680 GO:0005515
Lapu11g01492 421 Pfam WD domain, G-beta repeat 343 378 IPR001680 GO:0005515
Lapu11g01492 421 Pfam WD domain, G-beta repeat 116 153 IPR001680 GO:0005515
Lapu11g01492 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 120 154 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01492 115 291 U-box Gene Family AT2G33340 25.824 4.76e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01492 K24742 - gmx:100790592 748.043