Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01488 ATGGACATTCTTGCTTTCATGGTTTTATTTGCATGCATACATGTTCCCTCTCTCAAGATTTCAGTAGCAGATGATTCAGTCAACGTGCCCCAATCGGTGAACGATGGAGAGACTTTGGTATCGAAAGGTGGAAACTTTGAGCTTGGTTTTTTCAGCCCAGGTAATAACTCCAAGAAACGTTACCTGGGCATTTGGTACAAGAATATCCCAGTTCATACAATTGTTTGGGTTGCTAATAGGGAAAACCCCATCAATGATTCCTCGGGTATCTTAACACTGAACAACACAGGAAATCTTGTTCTCACCCAAAATGGGTCTGTGGTTTGGCACACCAACTCTCACAAACAAGCAGAGAATCCAGTGGCAGTGCTCTTGGACAGTGGCAATCTTGGCATATTGCCTGGTGGGCAAGAGATTGCAGTTAAGAGACTTTCCCAAACTTCTGCACAAGGTGTGGACGAGTTCAAAAATGAAGTCATGTTGATTGCAAAGCTTCAACATCATTCCACAAGACGTGCATTATTAGGTTGGACTACGCGGTTGGAAATTATTTGTGGAATTGCTAGAGGACTTCTTTATCTTCATCAAGACTCTAGATTAAAGATTATTCATAGAGATCTCAAAACTAGTAATATTCTTCTTGATACAAACATGAATCCCAAAATATCAGATTTTGGTATGGCTAGAATATTTGGAATTGATCAAAATGAAGCAAATACAAATAGAGTTATGGGAACATATGGTTACATATCGCCAGAATATGCTATGCATGGATCTTTTTCAGTTAAATCAGATGTATTTGGCTTTGGTGTGATTGTGTTGGAGATAATTAGTGGGAGGAAGAATAGAGGATTTTGTGATCCAGATCATCACCTAAATCTTCTTGGACATGCATGGAGACTTTGGATTGCAAAAAGGTCAATGGAACTTATAGATGACCTAGTAGATGACTCAGTCAATCCATCTAACATATTAAGATATCTTCATATTGGTTTGTTATGCGTACAACAAAAACCAGAGGATAGACCAAACATGTCATCGGTAATTTTAATGTTGAATGGTGAAAAGTCTTTGACGGAGCCAAGTCAACCTGGGTTCTACACGGGAAGAGAAAATTCGTATTCTTCTCCAAGAAATTGTGATGTTCATTCTCATAATGAAATGTCTAGCTCCTTCTTAGAGGCAAGATAG 1191 0.3879 MDILAFMVLFACIHVPSLKISVADDSVNVPQSVNDGETLVSKGGNFELGFFSPGNNSKKRYLGIWYKNIPVHTIVWVANRENPINDSSGILTLNNTGNLVLTQNGSVVWHTNSHKQAENPVAVLLDSGNLGILPGGQEIAVKRLSQTSAQGVDEFKNEVMLIAKLQHHSTRRALLGWTTRLEIICGIARGLLYLHQDSRLKIIHRDLKTSNILLDTNMNPKISDFGMARIFGIDQNEANTNRVMGTYGYISPEYAMHGSFSVKSDVFGFGVIVLEIISGRKNRGFCDPDHHLNLLGHAWRLWIAKRSMELIDDLVDDSVNPSNILRYLHIGLLCVQQKPEDRPNMSSVILMLNGEKSLTEPSQPGFYTGRENSYSSPRNCDVHSHNEMSSSFLEAR* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01488 396 SMART serkin_6 124 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g01488 396 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 131 170 - -
Lapu11g01488 396 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 158 360 - -
Lapu11g01488 396 Pfam D-mannose binding lectin 73 139 IPR001480 -
Lapu11g01488 396 Gene3D - 19 141 IPR036426 -
Lapu11g01488 396 Gene3D Transferase(Phosphotransferase) domain 1 162 364 - -
Lapu11g01488 396 SMART blect_4 30 151 IPR001480 -
Lapu11g01488 396 Pfam Protein kinase domain 160 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g01488 396 ProSiteProfiles Protein kinase domain profile. 1 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g01488 396 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 135 IPR036426 -
Lapu11g01488 396 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Lapu11g01488 396 SUPERFAMILY Protein kinase-like (PK-like) 133 371 IPR011009 -
Lapu11g01488 396 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 140 - -
Lapu11g01488 396 MobiDBLite consensus disorder prediction 361 396 - -
Lapu11g01488 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Lapu11g01488 396 CDD B_lectin 31 130 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01488 Lapu-Chr11 18412402 18415830 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01488 131 367 Receptor kinase-like Gene Family AT4G23150 52.768 4.28e-92 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lapu11g01488 Pkinase 1.5e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01488 - - gmx:100802416 418.313