Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01476 ATGGCGACGAGGGCAGCAGTGGCGGCGCCACGCGTTTTGCGACGCTTTTTCTGCTCGAACTCCGCTTCTTCTTCTTTCCCCTTCATCTCTACGCCGCCTCCGGGCGCCGTCCCCACCCCCGCTCGACCCACCGCGGAGCCCAACACCAACCTCTTTGTCTCTGGGCTTAGCAAACGGACTACTACAGAAAAGCTTCGGGAAGAATTTTCGAAGTTTGGTGAAGTTGTTCATGCGAGGGTGGTAACTGATCGAGTCTCAGGTTACTCTAAGGGGTTTGGTTTTGTGCAATATTCAACAATAGAAGGTGCTGCAAAGGGCATTGAAGGAATGGATGGCAAGTTTTTGGACGGTTGGGTTATATTTGCAGAGTATGCGAGACCAAGACCACCACCAGGACATTTAAATAACAACAGTCCTCAGTTTGGCCGGCAGTGA 435 0.5218 MATRAAVAAPRVLRRFFCSNSASSSFPFISTPPPGAVPTPARPTAEPNTNLFVSGLSKRTTTEKLREEFSKFGEVVHARVVTDRVSGYSKGFGFVQYSTIEGAAKGIEGMDGKFLDGWVIFAEYARPRPPPGHLNNNSPQFGRQ* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01476 144 SMART rrm1_1 50 123 IPR000504 GO:0003723
Lapu11g01476 144 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Lapu11g01476 144 PANTHER NUCLEOLAR PROTEIN 8 19 136 - -
Lapu11g01476 144 Gene3D - 30 135 IPR012677 -
Lapu11g01476 144 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 117 IPR000504 GO:0003723
Lapu11g01476 144 SUPERFAMILY RNA-binding domain, RBD 41 140 IPR035979 GO:0003676
Lapu11g01476 144 FunFam RNA recognition motif-containing protein 29 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01476 Lapu-Chr11 18126200 18130487 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01476 50 126 Eukaryotic Initiation Factors Gene Family AT2G23350 38.961 2.23e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01476 - - gmx:100789351 240.736