Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01468 ATGACTTCTAACGCCATCATCCAATACACCTCTTCTTCGTCTCATGCAATTAACACATATGACGTATTTGTGAGCTTCCGTGGTGAAGACACGCGCAACAACTTCACTGGTTTTCTCTTTGAAGCTCTCCGCAGAAAAGGCATCGACGCCTTCAAAGATGATGAAGATCTCAGAAAAGGTGAATCCATTGCACCCGAGCTGCTGCAAGCCATTCAAGGGTCTCGAATTTTCATTGTTGTCTTCTCAAAGAACTATGCTTCCTCTACTTGGTGCTTGCGTGAGCTGGCAGAGATATGTCACTGCGTTCAAACTTGGCCAAGACGTGTTATACCTATATTTTATGACGTTGATCCTTCGGTGGTGCGCAAACAGAGTGGATGTTATGAGGAAGCATTTGCAGAACACGAAGAAAGATTGAGAGAAGATAAAGAGAAGATGGAGGAAGCTCAGAGATGGAGAGATGCTCTCACACAAGTGGCCAATCTCTCTGGTTGGGATATCCGAAATAAGCCACAATATGTATATATTGAAGAAATTGTTCAAAATATAACAAATATTTTGGGTCCCAAAATTTCAAGTCTTCCAAAGGATGAACTAATTGGAATAGAGTCTCGGATTGAAGAATTAGCAAAAATTCTGTGCTTTGGATCAGTTGATGAGGTTCGAATTGTTGGAATTAGAGGGATGGGTGGCATAGGAAAGACAACTCTTGCTCGAGCTTTATATGAAAGAATCTCTCATCAATATGATTTTCATTGCTTTATTGACGATGTAAGCAAAATTTATCGAGATTCTAGTTCATTGGGTGTACAAAAGAAATTGATTTCTGGGTCTGTACATCAAGAAAATCTAGAGATTTCCAATGCTGTTGAGGGAACATGTTTGGTGTGGTCTAGGCTGCACAATGTTAGGGCACTTGTAGTTCTTGACAATGTTGATCAAGTTGAACAACTGAGGATGTTTACAGGGAACAGAAACAATTTGTTGCGTGAATGCTTAGGTGGAGGGAGCAAAATAATCATAATTTCTAGGGATGAACATATATTGAGGACATATGGAGTGGATGATGTTTATCAAGTCCAGCCGCTGAATGAGGAAAATGCTGTCCAGTTGTTCTGCAGAAATGCTTTCAAAGTTAATTATATTTTGAGCGATTATGAAAAAATGGCATATGATGTACTATCACATGCTCAAGGTCATCCCTTGGCAATTGAAGTAATTGGGTCATCTTTGCTCAGTAGAAATGTATCACAATGGAAAAGTGCATTGGCTAGGCTAAAAAAGAATAAAAGTAAAAATATTATGGATGTTTTGCGTATAAGTTTTGATCAGTTGGAAGATGAAGAGAAAGAAATATTTCTTGATATTGCATGCTTTCTTTGCCATTATAATGTGAAAGATGTGAAGGAAGTTCTAAACTTCCGTGGATTTCATGCTGAATGTGGTCTACAAGTTCTGGTTGATAAATCACTAATAACATGT 1482 0.3853 MTSNAIIQYTSSSSHAINTYDVFVSFRGEDTRNNFTGFLFEALRRKGIDAFKDDEDLRKGESIAPELLQAIQGSRIFIVVFSKNYASSTWCLRELAEICHCVQTWPRRVIPIFYDVDPSVVRKQSGCYEEAFAEHEERLREDKEKMEEAQRWRDALTQVANLSGWDIRNKPQYVYIEEIVQNITNILGPKISSLPKDELIGIESRIEELAKILCFGSVDEVRIVGIRGMGGIGKTTLARALYERISHQYDFHCFIDDVSKIYRDSSSLGVQKKLISGSVHQENLEISNAVEGTCLVWSRLHNVRALVVLDNVDQVEQLRMFTGNRNNLLRECLGGGSKIIIISRDEHILRTYGVDDVYQVQPLNEENAVQLFCRNAFKVNYILSDYEKMAYDVLSHAQGHPLAIEVIGSSLLSRNVSQWKSALARLKKNKSKNIMDVLRISFDQLEDEEKEIFLDIACFLCHYNVKDVKEVLNFRGFHAECGLQVLVDKSLITC 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01468 494 Gene3D - 362 446 IPR042197 -
Lapu11g01468 494 Pfam TIR domain 20 193 IPR000157 GO:0007165
Lapu11g01468 494 Coils Coil 132 152 - -
Lapu11g01468 494 ProSiteProfiles TIR domain profile. 18 187 IPR000157 GO:0007165
Lapu11g01468 494 SMART till_3 19 162 IPR000157 GO:0007165
Lapu11g01468 494 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 188 - -
Lapu11g01468 494 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 165 IPR035897 -
Lapu11g01468 494 Pfam NB-ARC domain 204 434 IPR002182 GO:0043531
Lapu11g01468 494 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 493 IPR044974 GO:0006952
Lapu11g01468 494 Gene3D - 17 188 IPR035897 -
Lapu11g01468 494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 456 IPR027417 -
Lapu11g01468 494 Gene3D - 189 355 IPR027417 -
Lapu11g01468 494 PRINTS Disease resistance protein signature 299 313 - -
Lapu11g01468 494 PRINTS Disease resistance protein signature 223 238 - -
Lapu11g01468 494 PRINTS Disease resistance protein signature 397 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01468 Lapu-Chr11 17866247 17869792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01468 198 493 WRKY Transcription Factor Family AT5G45050 37.209 2.00e-47 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01468 - - vra:106780741 798.89