Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01464 ATGTATGGAAGAGAATTTATTAAGGGCACTGAAATCCTGAGTAATAGCCTAATGAATCAAGTTTCAAGATTGCCTATCAATGGATTGGATGATCAACAGCGAATAATAACAAAGAAGTATCATCGGAAGCGTTCACAGATAGGCAATAGCAGTTCTAGAAGGGCTGCTACCATTCCAATCCGCACACATGGTGCCGATTCTTGCACCATTCTATCAGACTCAACCTTAGGTCCAGAATCACCCATAAAGTCAAGAAGGTATGGCGTGCCCTTCTGGCTTGAGGGGTTTAAGAAGAGTAGTAACATGGTTCCAGCATCTGGCCTTCCTGAATATGCATACAAGGATTTGCAGAAAGCAACACATAATTTTACAACAGTCATAGGACAAGGTGCATTTGGTCCTGTTTATAAAGCTCAGATGTCTACTGGTGAGACTGTTGCGGTTAAAGTTCTAGCAACTGATTCTAAGCAAGGGGAGAAAGAGTTTCACACAGAGGTCATGTTGTTGGGAAGGTTACACCATAGAAATCTGGTGAATTTGGTTGGATATTGTGCAGAAAAGGGGCAACATATGCTTGTATATGTATACATGAGTAATGGTAGCTTGGCATCCCACTTGTATAGTGATGTGAACGAAGCACTGCGCTGGGATTTGAGGGTTCACATAGCGTTAGATGTAGCAAGAGGCTTGGAGTATCTTCATGATGGGGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCGTCTAATATTCTGTTGGATCAATCCATGCGAGCCAGGGTTGCTGATTTTGGACTTTCAAGAGAAGAGATGGTGGATAAGCATGCAGCTATTCGGGGTACTTTTGGCTATCTTGACCCTGAGTATGTATCTTCAGGAACATTCACCAAGAAAAGTGATGTATACAGTTTTGGAGTGTTGCTCTTTGAAATTATAGCTGGCAGAAACCCTCAGCAGGGTCTTATGGAATATGTTGATCTTGCAGCAATGAACATGGAGGGAAAAGTTGGGTGGGAAGAGATTGTGGATTCTCACCTTCAAGGAAACTTTGATGTGAAGGAACTGAATGAAGTGGCAGCACTAGCCTACAAATGCATCAACCGTGCCCCAAGTAAACGTCCTTCTATGAGGGACATAGTGCAAGTGTTAACAAGGATCCTTAAATCAAGGCACCATGGGAATCATCACAGAAATTCCTTGTCAGCCACAGATGAAGTTTTCATTGATACTGATCAGCTAGAGACCATGATTTCAGTCACTGACCACAGGAGAGAAGAATCTAAGGATAATGCAACAGAGGTGTATGATGAGTAG 1314 0.4254 MYGREFIKGTEILSNSLMNQVSRLPINGLDDQQRIITKKYHRKRSQIGNSSSRRAATIPIRTHGADSCTILSDSTLGPESPIKSRRYGVPFWLEGFKKSSNMVPASGLPEYAYKDLQKATHNFTTVIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFHTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVYMSNGSLASHLYSDVNEALRWDLRVHIALDVARGLEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDKHAAIRGTFGYLDPEYVSSGTFTKKSDVYSFGVLLFEIIAGRNPQQGLMEYVDLAAMNMEGKVGWEEIVDSHLQGNFDVKELNEVAALAYKCINRAPSKRPSMRDIVQVLTRILKSRHHGNHHRNSLSATDEVFIDTDQLETMISVTDHRREESKDNATEVYDE* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01464 437 SUPERFAMILY Protein kinase-like (PK-like) 109 405 IPR011009 -
Lapu11g01464 437 Gene3D Transferase(Phosphotransferase) domain 1 197 409 - -
Lapu11g01464 437 PANTHER OS01G0750732 PROTEIN 49 399 - -
Lapu11g01464 437 Gene3D Phosphorylase Kinase; domain 1 94 196 - -
Lapu11g01464 437 FunFam calcium/calmodulin-regulated receptor-like kinase 1 197 404 - -
Lapu11g01464 437 Pfam Protein tyrosine and serine/threonine kinase 123 383 IPR001245 GO:0004672|GO:0006468
Lapu11g01464 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Lapu11g01464 437 ProSiteProfiles Protein kinase domain profile. 121 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g01464 437 SMART serkin_6 121 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g01464 437 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 94 196 - -
Lapu11g01464 437 CDD STKc_IRAK 127 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01464 Lapu-Chr11 17764234 17769359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01464 107 393 Receptor kinase-like Gene Family AT3G19300 43.686 7.81e-73 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Lapu11g01464 PK_Tyr_Ser-Thr 2.1e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01464 - - gmx:100785634 743.036