Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01462 ATGGAGAAGGAAGAAAAAAAGAAGATAAAGGGAAGCATTAAGGATAATATGCCAACAGTTTGGTTCTCTCTGAAGAAGTCTTTACACTGCAAATCTGAACCATCTGATGTTCATGACCCCAAATCAAGGAAGCACTTGAGCACAATCTTGACCAAGAGAGCAGGGAGGTCAGGGTGTTCCAGGTCTATAGCAAATCTCAAGGATGTAATCCATGGAAGCAAGAGGCATCTTGATAAGCCACCAAGTTGCAGTCCAAGATCCATAGGGAGCAGTGAGTTCCTCAACCCCATAACTCATGAGGTGATTTTAAGCAACTCAAGGTGTGAGCTGAAGATAACTGGTTATGGAGGCTTCCAAGAAGGGGTTGGCAGTGGTGGCAGCAATGCTGGTGGAGGTAGTGGTGGTTCAACTTTTGTGGGGACTTTGAGGCCAGGGACTCCTGGCCCTGGAGGGCACCCTACAATGCACTACTTTAATCCTTCTTTTAGGACCTCATCCACTCCTCCAAGGAAATCTCCTTTCCTCTTATCAGATAAAGAAGGTTCTGGTCCTCCTGGGGTTCAACCAAGCAATAGGTTATCTCTTGAGACAGATTCTAACGGCTCTTCAACTGTGACTTGCCACAAATGTGGAGAGCAATTCAACAAATGGGATGCTGCTGAAGCTCATCACCTGTCTAAGCATGCTGTGACTGAACTTGTGGAAGGAGATTCATCAAGAAAAATAGTGGAGATCATATGCAGGACTAGCTGGTTAAAGTCTGAAAACCAGTGTGGTAGAATTGAGCGAGTTTTGAAGGTGCATAACATGCAAAAGACTCTTGCAAGATTTGAAGAGTACAGGGAGATGGTGAAGATCAAAGCCAGCAAACTACAGAAGAAGCATCCAAGATGTCTGGCTGATGGAAATGAGCTTTTGAGGTTCTATGGCACTACTGTGGCATGCTCTCTTGGCCTTAATGGCTCTTCTAGTCTCTGCCTATCAGAAAAGTGCTGTGTTTGCAGAATCATAAGGAATGGTTTTTCAGCCAAGAAGGAGCTCAAGGGTGGAATTGGAGTCTTCACAACATCCACAAGTGGAAGGGCTTTTGAGTCCATAGAGATTTTTGGCGATGAACCATCACTGAGAAAAGCACTCATAGTGTGCAGAGTAATTGCTGGTAGGGTTCATAGGCCACTAGAGAACATTCAGGAAATGGCAGCACAAACAGGATTTGACTCATTGGCTGGAAAAGTTGGTCTATATTCAAACATTGAAGAGCTTTATTTGCTCAATCCAAGAGCTCTTCTTCCTTGCTTTGTGGTGATTTGCAAACCTTGA 1320 0.4447 MEKEEKKKIKGSIKDNMPTVWFSLKKSLHCKSEPSDVHDPKSRKHLSTILTKRAGRSGCSRSIANLKDVIHGSKRHLDKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGYGGFQEGVGSGGSNAGGGSGGSTFVGTLRPGTPGPGGHPTMHYFNPSFRTSSTPPRKSPFLLSDKEGSGPPGVQPSNRLSLETDSNGSSTVTCHKCGEQFNKWDAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQCGRIERVLKVHNMQKTLARFEEYREMVKIKASKLQKKHPRCLADGNELLRFYGTTVACSLGLNGSSSLCLSEKCCVCRIIRNGFSAKKELKGGIGVFTTSTSGRAFESIEIFGDEPSLRKALIVCRVIAGRVHRPLENIQEMAAQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKP* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01462 439 Gene3D - 219 438 - -
Lapu11g01462 439 MobiDBLite consensus disorder prediction 31 46 - -
Lapu11g01462 439 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 20 437 - -
Lapu11g01462 439 FunFam C2H2-like zinc finger protein 229 438 - -
Lapu11g01462 439 MobiDBLite consensus disorder prediction 161 201 - -
Lapu11g01462 439 ProSitePatterns Zinc finger C2H2 type domain signature. 207 228 IPR013087 -
Lapu11g01462 439 SUPERFAMILY ADP-ribosylation 230 438 - -
Lapu11g01462 439 MobiDBLite consensus disorder prediction 187 201 - -
Lapu11g01462 439 MobiDBLite consensus disorder prediction 31 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01462 Lapu-Chr11 17723189 17726018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01462 17 439 C2H2 Transcription Factor Family AT5G54630 68.683 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu11g01462 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01462 - - gmx:100787790 785.023