Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01457 ATGGTTTCCCGGGAAAACACCAATTGGCTCTTCGATTACGGCTTGATCGACGATATTCCCGTCCCTGATGCCTCCTTCACCGTCCCTTCCTCCGCCTTCACATGGCCCCCTAACGCATTGAACGCCACTTCCAATGTCGGTGTTGAAATTGATGGTTCATTGGCGGATTCTGATGGTCTCAAAGAGTCTGGCTCAAAGAAAAGGGTTAGATCTGAGACATGTGCTGGTTCTAGCTCCAAGGCATGTCGGGAGAAGTTGCGAAGAGATAAGCTTAACGACAAGTTTGTTGAATTGGGCTCTATTTTGGAGCCTGGAAGGCCTACAAAAACGGACAAGGCTGCTATCCTTATTGATGCTGTCCGAATGGTGACACAGTTACGGGGTGAAGCACAGAAGTTGAAAGACTCTAATCAGGGTCTTCAAGAAAAGATTAAAGAATTAAAGGCTGAGAAGAATGAACTTCGAGACGAGAAACAGATTCTCAAGGTGGAGAAGGAGAAGTTGGAGCAGCAGTTGAAATCTTTGAATGCACAACCCAGTTTCATGCCTCCCCCTGCAGCTATCCCTGCAGCATTTGCAGCACAAGGTCAAGCCCATGGAAACAAGTTGGTACCTTTTATTAGTTATCCAGGAGTTGCAATGTGGCAATTCATGCCGCCTGCTGCAGTGGATACTTCACAGGATCACGTACTCCGTCCACCAGTTGCCTAA 711 0.4754 MVSRENTNWLFDYGLIDDIPVPDASFTVPSSAFTWPPNALNATSNVGVEIDGSLADSDGLKESGSKKRVRSETCAGSSSKACREKLRRDKLNDKFVELGSILEPGRPTKTDKAAILIDAVRMVTQLRGEAQKLKDSNQGLQEKIKELKAEKNELRDEKQILKVEKEKLEQQLKSLNAQPSFMPPPAAIPAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01457 236 Gene3D - 78 156 IPR036638 GO:0046983
Lapu11g01457 236 SMART finulus 81 132 IPR011598 GO:0046983
Lapu11g01457 236 FunFam Transcription factor bHLH34 66 124 - -
Lapu11g01457 236 CDD bHLH_AtILR3_like 80 155 - -
Lapu11g01457 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 150 IPR036638 GO:0046983
Lapu11g01457 236 Coils Coil 123 178 - -
Lapu11g01457 236 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Lapu11g01457 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Lapu11g01457 236 PANTHER BHLH TRANSCRIPTION FACTOR 3 236 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01457 Lapu-Chr11 17620379 17624653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01457 1 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 69.456 2.18e-111 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu11g01457 HLH 3.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01457 - - gmx:100788858 409.453