Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01435 ATGGCTACTACAATAACAGAGCAAGAGTCCTCATCACGTGCCTTGCACGTGCTCGACTACACCCCCACCACCACAACCTCCGACGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGCATGGAGAAGGCAACCAGAGCGACTCCCCCGGCGCGGGGAGGTGGTCATCGGCGGCGCGCGGCTGCGCGGGGCGGCGCGGGGGAGGAGCGTTGTGGAGTGTGTTGGACCCGAGGACGAAGTGGGTCCAGGAATGGAACAGAGTGTTCCTGCTAGTGTGCGCCGCGGGGTTGTTCGTGGACCCTCTGTTTTTCTACGCGCTCTCCGTTAGCGACTCGTGCATGTGCGTGTTCGTTGACGGGTGGCTCGCCGTTACCGTGACGGTGCTGCGGTGCATGACGGACGCGCTGCACCTGTGGAACATGGTGATCAGAATGAAGATGGCCAAACGCACCTTCGGGTTGGGCGCCGCCGCCGGACTCAGAGACACCCGGCCGCGCGCCGTCGCGCTAGGGTATTTTAAGTCACGGACAGGATTCGTTTTTGATATGTTCGTGATTCTTCCTCTGCCACAGATTATGCTTTGGGTGGCAATCCCTTCGTTGTTGGAGAAAGGTTCAGTGACGTTGGTGATGACAGTGTTCTTGATCATATTTCTCTTCCAATACCTTCCCAAAATTTATCACTCTGTTTGCCATCTGCGACGCACTCAAAACCTCTCTGGCTACATTTTTGGAACAGTTTGGTGGGGAATCGCCCTTAACATGATCGCTTATTTTGTTGCTTCCCATGCAGCAGGGGCATGCTGGTACTTGCTGGGGATTCAAAGAGCAGCAAAGTGTCTGAAAGTGCAGTGTGGGAAAACAAGTGGGTGTGGGATGAAGATAGTGTCATGTGAAACGCCTATATATTACGGAAGCAAGAGTTTGATAGTTACGGATAGAGGAAGGCTAGGGTGGGCAGAGAACAGGGAAGTGAGGCACACATGTCTGAATGGACCAGACAACTACACCTATGGAGCTTATAGATGGACCGTTCAGCTTGTCACTAACGATAATCGTTTGGAGAAGATCCTTTTCCCCATCTTCTGGGGCCTCATGACTCTTAGCACTTTTGGAAACCTAGAAAGTACAACAGAATGGCTAGAAGTGGTTTTCAACATCATAGTGCTGACCAGTGGCCTTCTTCTTGTAACCATGTTGATAGGAAACATCAAGGTATTTTTGCATGCAACAACGTCAAAGAAGCAAGCAATGCAGTTGAAGATGAGGAATATTGAATGGTGGATGAGAAAACGAAGGTTGCCACAAGGGTTTCGACAGCGTGTGCGTAACTATGAGAGACAGCGTTGGGCTGCCATGAGAGGCGTTGATGAATTCGAAATGACCAGAAATCTTCCTGAAGGGTTAAGAAGAGACATCAAGTACCATCTTTGTCTAGACTTGGTTAGACAGGTGCCTCTGTTTCAACACATGGACGATCTGGTTCTGGAGAACATCTGTGACCGTGTGAAGTCTCTGATATTCACAAAGGGAGAAACAATAGCAAGAGAAGGAGACCCAGTTCAGAGAATGCTGTTTGTAGTAAGGGGACACCTTCAAAGCAGCCAAGTCCTAAGGGATGGTGTGAAGAGTTGCTGCATGTTAGGACCAGGAAACTTCAGTGGTGACGAGCTTCTTTCATGGTGTTTGAGGAGACCCTTCATAGAACGTCTTCCACCATCTTCATCCACACTCATCACTTTGGAAACCACAGAGGCTTTTGGCCTTGAAGCCCAGGACGTGAAGTACGTGACACAACATTTCAGGTACACTTTTGTTAAGGAAAAGGTGAAGAGAAGTGCCAGGTATTACTCACCAGGGTGGAGAACTTGGGCTGCTGTGGCCATTCAATTGGCTTGGAGGAGGTACAAACATAGGTTGACTTTGACCTCTCTGTCCTTTATAAGACCTAGGAGACCCTTGTCAAGGTCCTCTTCCATGGGAGAAGATAGGCTTCGCCTCTACACTGCTTTGTTAACCTCACCAAAGCCTAATCAGGATGATTTTGACTTTTGA 2058 0.5 MATTITEQESSSRALHVLDYTPTTTTSDEEEEEEEEEEEEEHGEGNQSDSPGAGRWSSAARGCAGRRGGGALWSVLDPRTKWVQEWNRVFLLVCAAGLFVDPLFFYALSVSDSCMCVFVDGWLAVTVTVLRCMTDALHLWNMVIRMKMAKRTFGLGAAAGLRDTRPRAVALGYFKSRTGFVFDMFVILPLPQIMLWVAIPSLLEKGSVTLVMTVFLIIFLFQYLPKIYHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAKCLKVQCGKTSGCGMKIVSCETPIYYGSKSLIVTDRGRLGWAENREVRHTCLNGPDNYTYGAYRWTVQLVTNDNRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRRLPQGFRQRVRNYERQRWAAMRGVDEFEMTRNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIAREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAQDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPLSRSSSMGEDRLRLYTALLTSPKPNQDDFDF* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01435 685 ProSiteProfiles cAMP/cGMP binding motif profile. 488 598 IPR000595 -
Lapu11g01435 685 MobiDBLite consensus disorder prediction 25 44 - -
Lapu11g01435 685 Pfam Cyclic nucleotide-binding domain 509 596 IPR000595 -
Lapu11g01435 685 Gene3D Jelly Rolls 486 604 IPR014710 -
Lapu11g01435 685 FunFam Cyclic nucleotide-gated ion channel 1 415 479 - -
Lapu11g01435 685 Gene3D Helix hairpin bin 413 479 - -
Lapu11g01435 685 MobiDBLite consensus disorder prediction 1 24 - -
Lapu11g01435 685 Pfam Ion transport protein 86 405 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lapu11g01435 685 SUPERFAMILY Voltage-gated potassium channels 78 409 - -
Lapu11g01435 685 FunFam cyclic nucleotide-gated ion channel 4 486 604 - -
Lapu11g01435 685 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 42 650 - -
Lapu11g01435 685 CDD CAP_ED 488 594 IPR000595 -
Lapu11g01435 685 MobiDBLite consensus disorder prediction 1 62 - -
Lapu11g01435 685 SUPERFAMILY cAMP-binding domain-like 414 602 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01435 Lapu-Chr11 17206635 17219166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01435 63 684 Ion Channels AT5G54250 77.603 0.0 1010
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01435 K05391 - gmx:100783341 1220.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00474 5 4128945 4132361 Lapu11g01435 11 17206635 17219166 PCT