Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01425 ATGAGCCGCCGCAGGCACAACTCCACACCTTTGCCACAGCAAAGAGGTTTTAGATCCTATGATGGCCACACTTACAATCATCATGAATCCAATCAAGTGCCTGTGTTTTACAGATCTAACACTACTCATGCCACCGATGAAAGAACTTCAGATGTACTACCTCGACAACGGGTTTGGGAATTCAGACATCCTGTAGGATTCCACCACAGTATACCTAATTTTCCATCAGCACCACCTAGAAGACAACAAATTCATGCTCACAATGAGGATATGGGAAGGCTGAGAGATATTTCCCTTCAGCCATCTTCAAGATATACATTCCAAACAATCACACAAGCTCCCCCAGTGGTAGAAATTTCCAAATCAACGGCCTTGAGCAAGCTTGAGAAAGTATTGTATGACCATCACCCTCCTCTAAAGAGGTATGCTAAGAACCTGAGCTTATATTACAGAAACAATGCTGAAGAAAACCCTTTGAAAGAGAAGGAGAAGGAAAAAGATGAAGATGGTAAAAGGTGTGCTATTTGCTTGGAAGATTTTAAGACTGGAGAAGAGGTGATGCTCACTAAATGCAAGCACATGTTTCATGAGGATTGCATAGTACCATGGCTAACAAGGAAGGGCCAGTGCCCAGTTTGTAGGTTTGTGATTTGTGAGATGGGAAGTGGGAACCCTTCATCCTTCAACAGCAATGACTTTGCCACTTTGGAATCTAGCAACCTCATTAATGGAGAGATTTTGTCAGTTTTGAGGGCTGTGGAAGAAGCTTTTCAATTGAGCAGTATCACTTAA 792 0.4255 MSRRRHNSTPLPQQRGFRSYDGHTYNHHESNQVPVFYRSNTTHATDERTSDVLPRQRVWEFRHPVGFHHSIPNFPSAPPRRQQIHAHNEDMGRLRDISLQPSSRYTFQTITQAPPVVEISKSTALSKLEKVLYDHHPPLKRYAKNLSLYYRNNAEENPLKEKEKEKDEDGKRCAICLEDFKTGEEVMLTKCKHMFHEDCIVPWLTRKGQCPVCRFVICEMGSGNPSSFNSNDFATLESSNLINGEILSVLRAVEEAFQLSSIT* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01425 263 ProSiteProfiles Zinc finger RING-type profile. 173 214 IPR001841 -
Lapu11g01425 263 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 56 215 - -
Lapu11g01425 263 MobiDBLite consensus disorder prediction 1 15 - -
Lapu11g01425 263 Pfam Ring finger domain 172 214 IPR001841 -
Lapu11g01425 263 FunFam RING/U-box superfamily protein 157 231 - -
Lapu11g01425 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 226 IPR013083 -
Lapu11g01425 263 SMART ring_2 173 213 IPR001841 -
Lapu11g01425 263 MobiDBLite consensus disorder prediction 1 29 - -
Lapu11g01425 263 SUPERFAMILY RING/U-box 154 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01425 Lapu-Chr11 16989294 16991091 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01425 138 257 C3H Transcription Factor Family AT3G58720 49.606 1.55e-34 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01425 - - vun:114168869 413.305