Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01396 ATGCGTCCACCGCGGAAGAAGGTGAATTTCCGCCGCGGCGACAAGGTGGAGGTTTGCAGCAACGAGGAGGGCTTCCTCGGCTCCTACTACCTCGCCACGGTCGTTTCGCGCCTCGACAACGGTCTGTACGTCGTACGCTACGACACGCTGCTCGAGGACGACGGGTCCCAGCCCCTCACGGAGACCCTCTTCCCCAAGGAGCTCCGCCCCAAGCCTCCGCGCCTCGCCGCCACCTCCTCCTTCGCGCGCTGCCAGCGCGTCGACGCCTTCGACAACGACGGCTGGTGGGTGGGCGAGATCTCCGGCAAGGTCGACGACCACCACTACTATGTTTATTTCTCCACCACTCACGAGGAGATCATGTACCCCGTCTCTGCAATTAGGGTTCACCAGGAGTGGCTCAACGGCCAATGGATTCGCTCCGATTGA 429 0.627 MRPPRKKVNFRRGDKVEVCSNEEGFLGSYYLATVVSRLDNGLYVVRYDTLLEDDGSQPLTETLFPKELRPKPPRLAATSSFARCQRVDAFDNDGWWVGEISGKVDDHHYYVYFSTTHEEIMYPVSAIRVHQEWLNGQWIRSD* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01396 142 CDD Tudor_Agenet_AtDUF_rpt1_3 10 73 - -
Lapu11g01396 142 Gene3D - 1 88 - -
Lapu11g01396 142 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 8 140 - -
Lapu11g01396 142 SMART agenet_At_2 8 76 IPR014002 -
Lapu11g01396 142 SMART agenet_At_2 79 135 IPR014002 -
Lapu11g01396 142 CDD Tudor_Agenet_AtDUF_rpt2_4 85 129 - -
Lapu11g01396 142 Pfam Agenet domain 13 73 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01396 Lapu-Chr11 16261749 16262484 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01396 20 133 PHD Transcription Factor Family AT5G58610 33.582 1.90e-13 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01396 - - vra:106753183 278.1