Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01375 ATGGAAATGGAGGATTTTTTATGGGGTGGTGACATTGATGGGGATTTCCCTAAGGGGAACCATGATGGTTTTGAAGGAAGCAATGGAGTGATTGGAAGTGGGTGTGGTTCATCTTTCTCCCTGGTTTTGGATAGGGAGAGAGGGGAGCTTGTGGAGGCTCCTGTGAAATTGGAAAGGAAAGGGGTGTCCACTGAGAGAAGCACTGAGGCTTTGAAGAACCATAGCGAGGCAGAGAGGAGGAGGAGGGCAAGGATTAATGCACATCTTGATACACTTCGCAGTGTCATTCCAGGTGCTATGAAGATGGACAAAGCATCATTACTTGGTGAGGTTATTAGACATTTGAAAGAGCTGAAAAGGAATGCAGCACAAGCTTGTGAAGGTTTGATGATACCAAAGGACAATGATGAAATAAGTGTTGAAGAACAAGAGGGTGGCTTTAATGGTTTTCCTTATTCAATTAGAGCATCACTATGTTGTGAATACAAACCTGGCCTATTGTCTGATATAAGACAAGCACTAGATTCTCTTCATCTTATGATAACAAGGGCAGATATTGCAACCTTAGAAGGCAGGATGAAGAATGTGTTTGTGATCATTAGCTGCAAAGAACAGAACTTCGAAGATGCTTCATACCGTCAGTTTCTGGCTGGTTCTGTTCACCAAGCTCTTAGGTCTGTGCTCAATAGATTTTCTGTTTCACAGGACATTTTAGGAACCAGGAAAAGAAGGAGGATTTCTATATTCAGTTCTTCATCTTTAGAAGATTTCTTGTAA 777 0.4196 MEMEDFLWGGDIDGDFPKGNHDGFEGSNGVIGSGCGSSFSLVLDRERGELVEAPVKLERKGVSTERSTEALKNHSEAERRRRARINAHLDTLRSVIPGAMKMDKASLLGEVIRHLKELKRNAAQACEGLMIPKDNDEISVEEQEGGFNGFPYSIRASLCCEYKPGLLSDIRQALDSLHLMITRADIATLEGRMKNVFVIISCKEQNFEDASYRQFLAGSVHQALRSVLNRFSVSQDILGTRKRRRISIFSSSSLEDFL* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01375 258 Pfam Helix-loop-helix DNA-binding domain 73 118 IPR011598 GO:0046983
Lapu11g01375 258 CDD ACT_UUR-ACR-like 157 228 - -
Lapu11g01375 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 118 IPR011598 GO:0046983
Lapu11g01375 258 PANTHER TRANSCRIPTION FACTOR BHLH30 42 250 IPR045847 GO:0003700|GO:0006355
Lapu11g01375 258 SMART finulus 75 124 IPR011598 GO:0046983
Lapu11g01375 258 Gene3D - 63 126 IPR036638 GO:0046983
Lapu11g01375 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 122 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01375 Lapu-Chr11 16144403 16145755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01375 23 247 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 36.250 3.23e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu11g01375 HLH 7.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01375 - - gmx:100788819 439.499