Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01367 ATGCTCACGCGCCGATCTCGCCACCGTGCCTCTGTTCGCCGACTCACCCTTGCAGCCCTTCACGTCTCTGACATGGACGCTGCAAACCGCAGGACCGAACCATCACATACAGGACTCGACCCTGGTATAGTAGCGTCGCTGCCAACCTTCACCATGAAGGCAAAGGTTTTGAAAGATAGTAGTGATGCTTCTTCATCGGTAGTGGAGTGTGTTGTATGCTTGAATGCCCTAGAAGGTGATGAAAAAGTCAAGTTGCTACCAAACTGTAACCACTTTTTTCATGTGAGTTGTATTGACATGTGGCTTGGTTCTCACTCTACGTGTCCTCTTTGTCGAGCCGAGGTTAAACCTCGGCTTCAACCACATGATCGTGAAGATCCTGTTAGTGCTGCTCTTGATGAGGCACCTCTTATGTTTGATGGTGTTAGTAATGGTGAATCTTTCAAAAGTAATGGC 456 0.4825 MLTRRSRHRASVRRLTLAALHVSDMDAANRRTEPSHTGLDPGIVASLPTFTMKAKVLKDSSDASSSVVECVVCLNALEGDEKVKLLPNCNHFFHVSCIDMWLGSHSTCPLCRAEVKPRLQPHDREDPVSAALDEAPLMFDGVSNGESFKSNG 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01367 152 SMART ring_2 70 111 IPR001841 -
Lapu11g01367 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 118 IPR013083 -
Lapu11g01367 152 CDD RING-H2_EL5-like 69 112 - -
Lapu11g01367 152 Pfam Ring finger domain 69 112 IPR001841 -
Lapu11g01367 152 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
Lapu11g01367 152 FunFam E3 ubiquitin-protein ligase ATL6 26 118 - -
Lapu11g01367 152 SUPERFAMILY RING/U-box 55 119 - -
Lapu11g01367 152 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01367 Lapu-Chr11 15992811 15993266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01367 38 131 C3H Transcription Factor Family AT2G42360 50.000 1.94e-28 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01367 K19038 - gmx:100783358 203.371