Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01343 ATGCTGAGAAAGATGGATGAAGGAGAAATCATCACAAATGCTTTCCCTCACAACCTAACTGCTTCTGCTGCATCATCAAATAGTAACAATCCTCCTCCTGCTTTGAAGAGGAAGAGAAACCTCCCAGGAAACCCAGATCCTGAAGCTGAAGTCGTAGCCTTATCACCAAAGACTCTCATGGCTACCAACAGATTCTTGTGCGAAACTTGTGGGAAGGGTTTCCAGAGGGATCAAAATCTTCAACTCCATCGACGAGGACACAACCTTCCTTGGAAGCTTAAGCAGAGAACGGGGAAGGAAGCAAGGAAGAGGGTTTATGTGTGTCCAGAGAAGAGTTGTGTCCACCATGACCCTTCAAGGGCTCTTGGAGATTTAACTGGGATAAAGAAGCACTTTTGCAGAAAGCACGGTGAAAAGAAGTGGAAGTGCGAGAAGTGCTCAAAGCGTTATGCTGTGCAGTCTGATTGGAAAGCACACTCCAAGACCTGTGGCACCAGAGAATACAAATGCGACTGTGGAACTATCTTTTCAAGGAGGGACAGTTTCATCACTCACAGGGCCTTCTGTGATGCTTTGGCAGAAGAAACAGCTAGGGTAAATGCATCATCAGACATGAACACTTCCTTGGGTGGTAGCATTGGTTACAACGTAATTGGATCTTCCCTCGGCCCTAACATGGCAACCCATTTTTCTTCAATTTTCAAACCAGTTTCAAGCACAGAAGAAACAAGCAATCAAACATCTAGGGGACTACCCCTTTGGATGGGTCAAACATCTCCTCAGGCTCAAGAAACAATGGTCAACAACAATTTGAGTGAGATTCATCAACTTGGGTCTGCCACAAGCTCAGCAACAGCATATGGTGGCAACTCACTAGTCCAATGCTCAAATTTTCCACCTTCAAACTATCAACTAAGTTTGGTGTTTGGAACTAAACTTTCCAGTAACAATAACATCCAAAAGCTAACAACTAGCACCACTACATCGCTTCCCCTTGGAAGCTCGAGTGTTCCTTCTTTGTATAGCTCCCAACACCAACCCCACCAAACATGTTCATCAGCAAACATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCTCAAATTGGATCAAGCTCAAGTGACCCTTCATGGCTTGGGAGCATAGGTTTGAAATGTGGTAGCAGTACTCAAGGTCAAGATGGGAATAACAGTAACAAGTTTAATGGCATGTACGGTTCAAGTTTAGTCCTCAGCACTCTTGGGACTGAACCAGAGAACTCTGCATGTGACTTGTCACAAATGCACCCTCCCAAACGTAGACACGTACTCAATGAAGAAAGTGGAGGGGGGCAATTTAGGGACTTCCTTGGTGTTGGTGTGCAAAACCATTTGCCACACTTCATCAATCAACGGGTGGATTTGATTTGA 1407 0.4499 MLRKMDEGEIITNAFPHNLTASAASSNSNNPPPALKRKRNLPGNPDPEAEVVALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTGKEARKRVYVCPEKSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNASSDMNTSLGGSIGYNVIGSSLGPNMATHFSSIFKPVSSTEETSNQTSRGLPLWMGQTSPQAQETMVNNNLSEIHQLGSATSSATAYGGNSLVQCSNFPPSNYQLSLVFGTKLSSNNNIQKLTTSTTTSLPLGSSSVPSLYSSQHQPHQTCSSANMSATALLQKAAQIGSSSSDPSWLGSIGLKCGSSTQGQDGNNSNKFNGMYGSSLVLSTLGTEPENSACDLSQMHPPKRRHVLNEESGGGQFRDFLGVGVQNHLPHFINQRVDLI* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01343 468 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Lapu11g01343 468 FunFam protein indeterminate-domain 5, chloroplastic-like 119 198 - -
Lapu11g01343 468 MobiDBLite consensus disorder prediction 17 48 - -
Lapu11g01343 468 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 452 IPR031140 -
Lapu11g01343 468 MobiDBLite consensus disorder prediction 17 34 - -
Lapu11g01343 468 Gene3D Classic Zinc Finger 98 189 - -
Lapu11g01343 468 Gene3D Classic Zinc Finger 61 88 - -
Lapu11g01343 468 FunFam protein indeterminate-domain 12-like 44 112 - -
Lapu11g01343 468 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Lapu11g01343 468 SUPERFAMILY beta-beta-alpha zinc fingers 64 161 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01343 Lapu-Chr11 15614665 15617592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01343 32 454 IDZ Gene Family AT1G03840 49.894 6.96e-133 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu11g01343 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01343 K25870 - gmx:100790620 766.918