Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01330 ATGACCACCATTTGTTCAGAACACAAGTTCCAACTTCAACCCTCCCACCAACTTCTCTCCCTCAAGAAATCCCTAAGGGACATTGACATCCCCCCAAGGAAGCTCCTCACGCGCCGCTCAGCCGCCGACATGTTTTCCGACGACACCCTCCTCCACAAATACCTCCCCCACTGCAAATCCATGGACTCCGACGACTCTGATGATGTGGGAGACCCTTATGCCTCCGACGAATTCCGCATGTTCGAGTTCAAGGTTCGTCGCTGCACTCGCAGCCGGAGCCATGACTGGACAGACTGTCCATTCGCACATCCCGGTGAGAAGGCTCGCCGCCGCGATCCTCGCCGGTTTCATTACTCTGGGACCGTCTGTCCTGAGTATCGGCGCGGCCAGTGTAGCAGCGGCGATGCATGTGAGTTCTCTCATGGGGTGTTTGAGTGCTGGTTGCACCCTTCTAGGTATAGAACTGAGGCTTGCAAGGATGGGAAGAATTGCAAGCGAAAAGTTTGCTTTTTCGCTCACACCCCTCGCCAACTCAGGGTTTTGCCTCCCCAAGACAATAACAAGAAGAAAAAATGCACCAATATGAGTCCTCATAATCGTAATAATCATTGCTGTTTGTTTTGCCACTGTTCATCTACTTGTTCACCAACTTCTACCTTGTTTGGCATGTCTCATTTTTCTCCTCCTTTATCACCCTCTTCCTCTTCCTCTTCCCCTTCTAGGTTTGAGCCTAGCCACCATCATGGCCTTGTGAGCTACAAGGATGTGTTCTCCGAGCTTATGTGTTCCATGGAAGGTTTGAATTTTGGTGAGGCTTCATCTGTGTCTGCTTCTAAGCCTCACAATCTGTCTTGGCTTGATGCCTCTGAGGAGCAAAAACGGTTCAACATTATCACTGCTACTTGTGGAAGCTTTTCCAAGAATGGGAATGGAAGATTTTTGAGGGAAGAAAGTGGGGTTGTTATTATTAATACGTGTTGA 981 0.4944 MTTICSEHKFQLQPSHQLLSLKKSLRDIDIPPRKLLTRRSAADMFSDDTLLHKYLPHCKSMDSDDSDDVGDPYASDEFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPEYRRGQCSSGDACEFSHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHTPRQLRVLPPQDNNKKKKCTNMSPHNRNNHCCLFCHCSSTCSPTSTLFGMSHFSPPLSPSSSSSSPSRFEPSHHHGLVSYKDVFSELMCSMEGLNFGEASSVSASKPHNLSWLDASEEQKRFNIITATCGSFSKNGNGRFLREESGVVIINTC* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01330 326 Gene3D - 117 181 - -
Lapu11g01330 326 FunFam Zinc finger CCCH domain-containing protein 66 75 143 - -
Lapu11g01330 326 ProSiteProfiles Zinc finger C3H1-type profile. 118 144 IPR000571 GO:0046872
Lapu11g01330 326 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Lapu11g01330 326 SMART c3hfinal6 152 175 IPR000571 GO:0046872
Lapu11g01330 326 PANTHER UNKEMPT FAMILY MEMBER 47 276 IPR045234 -
Lapu11g01330 326 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 122 142 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01330 Lapu-Chr11 15388408 15389624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01330 73 239 C2H2 Transcription Factor Family AT5G12850 50.296 1.31e-53 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu11g01330 zf-CCCH 8.4e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01330 K23047 - gmx:100820375 500.36