Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01327 ATGCCCGCTCAGAAGCGTTCCTTCCCTGATTCTCCTCACGATCACCACCGCAACACCAAACACCACCACCAAGAAAAAACCGAACGAGAAGAAGAAGAAGCACAACAACAAGAAGGAGAGGATGATTATGAATCAAACGGTTCAGATTCTCACCGCGCTCCGTCCTCTCCCTCCGAAGATAATTCCGAATTTGTATATGTAGAACTTTTGGAGATACGCAAAGAAGTCCAATGTCCAATTTGCCTCGGTATCATTAAGAAGACGCGAACTGTTATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCGATGCGACTAGGGAACAATGAATGCCCTGCTTGTCGGACACACTGTGCCAGTCGTCGTTCTTTGAGAGATGATCCGAACTATGATGCTCTAATTGCAGCTTTATATCCAGACATTGAGAAGTACGAGGAAGAGGAGCTTGAGTTTCGTGAAGAGGACAAGAACCGCAATAAGCTGATTCAAGCTTCAATTGCAAAAGTTGTTCAACGACAATCTGAAGCACTGGTTAAGAGACGTAGAGATACACCAGGTTCATTTGTAACAAGATCACAGCGCAATCAACGAAATGTTCTTTCTAGGAGACAAAACCATCTAATTGATAATCAAGGATATGAAGATAATGAGGATGAAAATGACAATAATGAAAAGGACTCATCTTCCACAGATGAGCGATGTACAGAAATTAGGCAGAGAAGGCGAAAGAGGCGGACCAGAGTTCGCCCTTCTCAGCCATCATCATCGACAGCAAGTCCTGACGGTGGATGCATAGAAAGTGATGTGGATACAAGAGAGAATCGAGGAATTTCTTCTAGATCGTTGTCCAAACCTCAAAAGCTAACTTGGGGAAGGGGTGGTTTTAGGAGTCACACACGGCATGGCAGTGGCAGTGGCAATGGTATCAATAGCAAAAGTGCCCGCAGTAGCCGCGTGGCTAAGTTTGTTGATTATCTCCGTAGCTTGAATGAAAACACTGATGAGTTAGATGTCCATCTCATTCTTTTATCTCTGGACAAAATAAGTACACCAAGCCTGCAGCAGCCACACCTTTGCTGCCGACCAACTTTGTCTGTGAAGCACCTTTGTGAGTATGTTGCTCGCCAGACACCTTTGCCAGTTGAAGAAGTTGAGATATTGGCAGTTAAAGGATGCTGCAGTACAGTTTGTGACAAGTCATTTGATGAGATTTCATCCTTTGATCAGCCAACGGCGCTGATTATAGATCCTACGAAAGATGAACTGGAAACTTTACAAGGGCATGAGTCTTTGGCAGAACTTAAATCCAAATGCAAATCTCAAACGGGGCATTTGATTCTGGCATACAGGCGGAAGGAGTGA 1371 0.4449 MPAQKRSFPDSPHDHHRNTKHHHQEKTEREEEEAQQQEGEDDYESNGSDSHRAPSSPSEDNSEFVYVELLEIRKEVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEDKNRNKLIQASIAKVVQRQSEALVKRRRDTPGSFVTRSQRNQRNVLSRRQNHLIDNQGYEDNEDENDNNEKDSSSTDERCTEIRQRRRKRRTRVRPSQPSSSTASPDGGCIESDVDTRENRGISSRSLSKPQKLTWGRGGFRSHTRHGSGSGNGINSKSARSSRVAKFVDYLRSLNENTDELDVHLILLSLDKISTPSLQQPHLCCRPTLSVKHLCEYVARQTPLPVEEVEILAVKGCCSTVCDKSFDEISSFDQPTALIIDPTKDELETLQGHESLAELKSKCKSQTGHLILAYRRKE* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01327 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 141 IPR013083 -
Lapu11g01327 456 MobiDBLite consensus disorder prediction 1 61 - -
Lapu11g01327 456 Pfam Zinc finger, C3HC4 type (RING finger) 77 117 - -
Lapu11g01327 456 MobiDBLite consensus disorder prediction 8 33 - -
Lapu11g01327 456 PANTHER OS11G0578200 PROTEIN 1 455 IPR044592 -
Lapu11g01327 456 Coils Coil 20 40 - -
Lapu11g01327 456 Coils Coil 147 167 - -
Lapu11g01327 456 SMART ring_2 78 117 IPR001841 -
Lapu11g01327 456 CDD RING-HC_RING1-like 75 140 - -
Lapu11g01327 456 ProSitePatterns Zinc finger RING-type signature. 94 103 IPR017907 -
Lapu11g01327 456 MobiDBLite consensus disorder prediction 176 316 - -
Lapu11g01327 456 MobiDBLite consensus disorder prediction 191 210 - -
Lapu11g01327 456 SUPERFAMILY RING/U-box 65 132 - -
Lapu11g01327 456 ProSiteProfiles Zinc finger RING-type profile. 78 118 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01327 Lapu-Chr11 15343436 15351187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01327 71 141 C3H Transcription Factor Family AT3G23060 35.135 7.40e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01327 K10695 - gmx:100819311 687.952