Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01323 ATGGTTGAGGTTGACTTTCAAAGATTGAAACTTGAGAGGAGGGAAGTGGGGATTTTGTTGAGAATTTCATGTGGGTGGCTGTTGTTTTTGTTGTTTCTGAGTCCTGTGGCTGGTTTGAGACCCTTAAGGGATAGAACTAATTCTTGGGGTGATGAGTGGGTTTTTACAAGAAAAGAGGAAAGTGACTTAGGTCCATTTTCACAATGGAACATAACTGGAACTTACAGAGGGACTTGGAAGTTTTTAGATACTACAAATGGCTCTACCAGATTTCCGGACATCAGAAAACTAAATGGAAATTCTGTAATTGAATTAGTTAGTGTGCCCACAAAGATAACCGGTGTACATTATGTGCAGGGGGTAGTCATATTCCATGATGTATTTGACAATGAATACAATGTTGGTGGTGCTCAAATCAGAGTAGAAGGTGTATATATATGGCCTTATAGGCAACTTCGAATGGTAGCCAACAGTGGTAAAGATGGGGGACTAAATCCGGAGGGAGACTATATTTTATCCAATCCATATCATCTGCTTGGAGTTTTCTCGTCTCAAGTATTCCAAGAATCTTCACGACAAAAGATGTGGAGAAGAAAGCATTCTCCATTGCATGGCATGGAGAAACATTGCAATGTAGAAATAGCTGCACAGGTTTTGCGACTGTCATCATCAAAACATGAAGGAGATCGTGATTCTTTTCAGCTAGTAGGGTTAATGGAGAGTCCCTCTATGGATGATGATGGGGACTGCTTCCCACCATTACAGTTAAATGCAACATCAATTAACATTGAAGTCTACTATAATAAAGCAGTGAACTATACCTTGATGGTTACTTTTATCTCATTTTTGCAAGTTCTTCTATTAATTCGGCAAATGGAGCATAGCAACACCCAATCTGGGGCTGCTAAGGTTTCAATATTAACAATTGGTCAGCAAGCTATAGTAGATGCTTATCTTTGCCTTATACATTTGACTGCCGGAATACTAGTTGAATCCTTGTTCAATGCTTTTGCGACTGCTGCATTTTTCAAGTTTGTGGTATTCTCAATATTTGAGATGAGATATCTCCTTGCCATCTGGAAGGCAAGTAGGCCTTTGAGCAATGGTGAAGGTTGGGAGGCAATGAGGCGTGAACTGTCAGTTTTATATAGCCGATTCTATGGGATACTATTGGGGGGCATACTGCTCATGTATGAATTCCACAATCATTTGAGACTTATTCTTCTTCTTGTATACTCCTTTTGGATACCTCAGATAATCACCAATGTCATTCGAGACTCACGCAAGCCATTGCATCCTCATTATATATTAGGCATAACTATTACTCGACTAGCAATCCCATTATATATTTTTGGTTGTCCTAACAACTTCTTGCGTATAGAACCAGATCAGAGCTGGTGTTTTTGTTTGGCTATATTTGTTGGACTTCAAGCTGCAATTCTCTTGCTTCAGCACTATTTTGGGTCTCTGTGGTTCATTCCTCGTCAGTTTCTACCTGAGAAATACTGCTATTATAGGAGGTTTGCTCAAGATACAAATCATGCCACAGACTGTGTTATATGCATGACAGCCATTGATCTTTCTCCACGATCAAATGATTGCATGGTGACCCCTTGTGATCATTTCTTCCACTCTGGTTGTTTGCAAAGGTGGATGGATATAAAGATGGAGTGCCCGACTTGCCGACGCCCTCTTCCACCTGCCTGA 1707 0.4036 MVEVDFQRLKLERREVGILLRISCGWLLFLLFLSPVAGLRPLRDRTNSWGDEWVFTRKEESDLGPFSQWNITGTYRGTWKFLDTTNGSTRFPDIRKLNGNSVIELVSVPTKITGVHYVQGVVIFHDVFDNEYNVGGAQIRVEGVYIWPYRQLRMVANSGKDGGLNPEGDYILSNPYHLLGVFSSQVFQESSRQKMWRRKHSPLHGMEKHCNVEIAAQVLRLSSSKHEGDRDSFQLVGLMESPSMDDDGDCFPPLQLNATSINIEVYYNKAVNYTLMVTFISFLQVLLLIRQMEHSNTQSGAAKVSILTIGQQAIVDAYLCLIHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLSNGEGWEAMRRELSVLYSRFYGILLGGILLMYEFHNHLRLILLLVYSFWIPQIITNVIRDSRKPLHPHYILGITITRLAIPLYIFGCPNNFLRIEPDQSWCFCLAIFVGLQAAILLLQHYFGSLWFIPRQFLPEKYCYYRRFAQDTNHATDCVICMTAIDLSPRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01323 568 PANTHER RING ZINC FINGER PROTEIN 99 567 - -
Lapu11g01323 568 SMART ring_2 518 561 IPR001841 -
Lapu11g01323 568 FunFam E3 ubiquitin-protein ligase, putative 504 568 - -
Lapu11g01323 568 Pfam Ring finger domain 517 562 IPR001841 -
Lapu11g01323 568 SUPERFAMILY RING/U-box 499 567 - -
Lapu11g01323 568 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 505 568 IPR013083 -
Lapu11g01323 568 CDD RING-H2_TUL1-like 512 567 - -
Lapu11g01323 568 SMART ringv_2 517 562 IPR011016 GO:0008270
Lapu11g01323 568 ProSiteProfiles Zinc finger RING-type profile. 518 562 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01323 Lapu-Chr11 15300121 15313348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01323 518 565 C3H Transcription Factor Family AT4G12190 39.583 8.93e-09 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01323 K23788 - gmx:100802452 1090.1