Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01322 ATGAGACGAGTGAGTAATGAAATTGAAGATGAGGTGCTTCCCAATGATCCGAGTGCAGCTCAGTTGAATGATGAGAGTTATGAAGGAAGTACCGGCGTTGTTCTGAAGAAAGGGCCATGGACGTCAACTGAAGATGATATTTTGGTGGATTATGTTAACAAGCATGGGGAGGGGAATTGGAATGCTGTTCAGAAGCACACAGGGCTATTACGTTGCGGCAAAAGTTGTCGGCTGCGATGGGCTAATCACCTAAGGCCGAATTTAAAGAAAGGGGCGTTTACCGCAGAAGAGGAGCGGTTCATTGCTGAACTTCATGCCAAAATGGGAAACAAATGGGCACGCATGGCAGCACATTTGCCGGGTCGCACCGATAATGAGATAAAGAATTATTGGAACACCCGGATCAAGAGGCGTCAACGGGCTGGGCTGCCACTTTATCCTCCAGAAGTGTGTTTGCAAGGTTTTCAAGAGACTCAGCGTAACCAAAGCAATGGTGGACTTAATGGTGGCAATAAATATCATCTTGATTTATTGCAGAAAAATAGTTATGAGATACATGGTGCTATGTTTGACAGTCTGAAGGATAATCAGGGAATCTTACCTTATGCACCTGAGTTTTCTGATGTTTCTGTTTATGGCAATATGCTAAAAGGTCTTGATTCTTCTCAATATTGTAGTGTTATGCCACCAGCATCACCTAAGCATAAGCGTCTTAGAGAGTCAACAATACCGTTTATTGATTCCAATGATACGAAAAAAAACGGTTTATATCCATTTTGTCAAATTCGGGACATTAATTCTGATAAGATTGCACAATCATTTGGAATGGAAGCACTCCTTGATCCTGGTCCCTCGTCACACAGCTCAATGTGTTACAGCCATTCACTTTCAAATGGCAATTCCTCTACTTCTAAGCCAACTTTTGAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAACTTGATTTAGGTAGCTGGGGTACATCTCCCCCACCTCCGTTGCTCGAGTCAGTTGGTGATTTCTTCCAGTCTCCTACACCAATTAGTACTCTCGAGTCAGATTGTTCTTCTCCACAAAATAGTGGCCTGCTGGATGCCTTGCTCTATCAGGCGAAGACTCTGACAAGTTCAAAGAACCATTATTCTGACAAAAGTTCAAATTCTTCTACTGCAACCCCCGGTGACAGAGGCGACAGCTCTGCTTTGAATGTGTACGAGACAGAATGGGAAGATTACGCTGACCCTGTATCTCCCTTTGGTGCGACTTCAATATTGAACGAGTGCCCTGCTCTTAGAGCCAATGAGAATTCATTGGACGAACAGCTATCCCTCCAGACATTTACTGGCAACATTCCAAAATTAGAGTTTGTTGATCAGGTTTGGACTCCTGACAGTGAAAATCAAGCCTTGTCCCTCTTGGATATCACTCGTCCAGACTTCTTCTTTGCTTCAGATTGGCATGACCTAGGTTCTGGGCATGGCAAGAACCAGGGCATCACGACTGATACAACAACGACCCTTCTTGGAGACGAATTTGTCACTGACCATAAGCCTATGACTTCTGGAACTTCTCAGTCAAGTCAGGTGTGGGGTTTTGGTTCTTGTGCAACGGCAGCTAATAATATGCATGCTCTGTGTCAGCTGTCAGATCTTGGTTAA 1665 0.4432 MRRVSNEIEDEVLPNDPSAAQLNDESYEGSTGVVLKKGPWTSTEDDILVDYVNKHGEGNWNAVQKHTGLLRCGKSCRLRWANHLRPNLKKGAFTAEEERFIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVCLQGFQETQRNQSNGGLNGGNKYHLDLLQKNSYEIHGAMFDSLKDNQGILPYAPEFSDVSVYGNMLKGLDSSQYCSVMPPASPKHKRLRESTIPFIDSNDTKKNGLYPFCQIRDINSDKIAQSFGMEALLDPGPSSHSSMCYSHSLSNGNSSTSKPTFEAVKLELPSLQYPELDLGSWGTSPPPPLLESVGDFFQSPTPISTLESDCSSPQNSGLLDALLYQAKTLTSSKNHYSDKSSNSSTATPGDRGDSSALNVYETEWEDYADPVSPFGATSILNECPALRANENSLDEQLSLQTFTGNIPKLEFVDQVWTPDSENQALSLLDITRPDFFFASDWHDLGSGHGKNQGITTDTTTTLLGDEFVTDHKPMTSGTSQSSQVWGFGSCATAANNMHALCQLSDLG* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01322 554 FunFam Transcription factor GAMYB 92 138 - -
Lapu11g01322 554 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 23 500 - -
Lapu11g01322 554 MobiDBLite consensus disorder prediction 380 402 - -
Lapu11g01322 554 Pfam Myb-like DNA-binding domain 37 84 IPR001005 -
Lapu11g01322 554 Pfam Myb-like DNA-binding domain 90 133 IPR001005 -
Lapu11g01322 554 SUPERFAMILY Homeodomain-like 36 131 IPR009057 -
Lapu11g01322 554 MobiDBLite consensus disorder prediction 380 399 - -
Lapu11g01322 554 Gene3D - 92 138 - -
Lapu11g01322 554 CDD SANT 39 84 IPR001005 -
Lapu11g01322 554 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Lapu11g01322 554 CDD SANT 92 133 IPR001005 -
Lapu11g01322 554 MobiDBLite consensus disorder prediction 1 24 - -
Lapu11g01322 554 SMART sant 89 137 IPR001005 -
Lapu11g01322 554 SMART sant 36 86 IPR001005 -
Lapu11g01322 554 Gene3D - 36 89 - -
Lapu11g01322 554 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 84 IPR017930 -
Lapu11g01322 554 FunFam MYB-related transcription factor 36 89 - -
Lapu11g01322 554 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 139 IPR017930 -
Lapu11g01322 554 ProSiteProfiles Myb-like domain profile. 35 84 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01322 Lapu-Chr11 15272414 15277574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01322 32 553 MYB Transcription Factor Family AT5G06100 42.293 1.08e-119 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu11g01322 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01322 K09422 - gmx:100810415 872.848