LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu11g01311	ATGTTCTTGCTAAGCTTCAAATCACTACTTACAAAGGCACAACCACCCTTTTACTTGGGAGATGACTGTGATTTCACCCCTCAAAAGCCTCTCAGCAATGCATACAAAACCAACATTAACAACATCCTCTCATGGCTATCTTCAGATGCAGCCATAAGCAAAGGCTATAACAACAAAACCATAGGCAACAGCAGCCCTGTGTATGGTCTCTATGACTGCCGTGGTGATGTGGTTGGCTACTTCTGCCAATTCTGTGTCTCCGCTGCTTCCAGAAGACTCCTTCAGCACTGCCCTAATAGGGTATCTGCTGTCATGTACTACAACTTCTGCATTCTGAGGTACTCTAATGAGAACTTCATAGGGAATGTTACAATAAACCATCCAAGGCATCATGTTGGGAACAAAACTGTGTCTGATGCAGATGAGATTCAAAAGGGTGAGGATTTCATGAGAAGTTTGATCAGAAAAGCAACGGTGGAGACCAACCAGTTGTACTACATGGATGGCTTCAATTTGAGCTCCACTCAGAGAAGGTATGGCTTGGTGCAGTGCACCAGAGACCTCACCAGTGAGAGGTGCAGACAGTGCTTGGAAGCCATGCTAGCACAAGTTCCCTCATGTTGTGAACATAAGTTGGGGTGGCTTGTAGGAACTGCAAGTTGTCACATAAAGTATGATGATTATATGTTCTACCTTTTCAACAACCAATCATATATTGTGCCTAGTTTAACAGCTAAACAAGGGGATGCTACTAAGTCAAAAAACTTGATCATTGGATTCAGTGTGGTGGGGTTAGTAGCTCTGTGTTTGAGTGTGTATTGCTTATGTTACTGGAATAGAGTTAGAAAAGATGGGCTGATAACTGATACTATTCCTCTATCTGCATATTCAAATTTGCCTATAATCCCATTAATCACAATTCTTGAGAGTACTGATAACTTCTCAGAAGCATCCAAATTAGGTGAAGGTGGATTTGGCCCAGTTTACAAGGGAATTCTACCAGATGGAAGACACGTTGCAGTCAAAAGGCTATCAAAAGCTTCTAGTCAAGGCTCAGAGGAGTTTAAGAATGAAGTGACATTCATAGCCAAATTGCAACATTGCAACCTTGTAAGACTTGTGGCATGCTGCTTGGAGGAGAATGAAAAGATACTTGTATATGAGTATTTGTCAAATGCAAGTCTTGACTTTCACCTATTTGATGATGAAAAAAGGAAGCAACTTGATTGGAAATTGAGGTCAAGTATTATCAATGGAGTAGCAAGAGGTCTTCTATATCTTCATGAGGACTCAAGACTCAAGGTAATCCACAGAGATCTTAAAGCTAGCAATGTTCTGTTAGATGATGAAATGAATCCAAAAATATCAGATTTTGGATTGGCAAGAGCATTTGAAAATGGTCAGAACCAGGCAAATACAAACCGAGTAATGGGCACTTATGGATACATGGCTCCTGAGTATGCTATGGAAGGATTGTTTTCGATGAAATCTGATGTTTTCAGCTTTGGAGTACTTGTTCTGGAAATCGTTTGTGGGAAAAAGAACAGTGGATTTTTTCTATCAGAACATGGTCAAAGTCTTCTTTTATATAGTTGGAGAATGTGGTGTGCAGGAAAATGTTTGGAATTGATGGATCCATTGTTAGAAAATTCCTACATATCCAATGAAGTTGAGAAGTTTATACAGATTGGTTTACTGTGTGTTCAAGAAGCAGCAACAACTAGACCAACCATGTCCACAGTCATGGTATTGTTTGCAAGTGATGTAGTGACCATTCCAAAACCTAACAAACCTGCATTCTCAGTTGGAAGAATGACCTCAGCAGAAACTTCTGCTTCAAAAGGTTCCAAAAATATTTCCATTAATGATGTATCAATCTCTAGTATTGTACCAAGGTAA	1899	0.3997	MFLLSFKSLLTKAQPPFYLGDDCDFTPQKPLSNAYKTNINNILSWLSSDAAISKGYNNKTIGNSSPVYGLYDCRGDVVGYFCQFCVSAASRRLLQHCPNRVSAVMYYNFCILRYSNENFIGNVTINHPRHHVGNKTVSDADEIQKGEDFMRSLIRKATVETNQLYYMDGFNLSSTQRRYGLVQCTRDLTSERCRQCLEAMLAQVPSCCEHKLGWLVGTASCHIKYDDYMFYLFNNQSYIVPSLTAKQGDATKSKNLIIGFSVVGLVALCLSVYCLCYWNRVRKDGLITDTIPLSAYSNLPIIPLITILESTDNFSEASKLGEGGFGPVYKGILPDGRHVAVKRLSKASSQGSEEFKNEVTFIAKLQHCNLVRLVACCLEENEKILVYEYLSNASLDFHLFDDEKRKQLDWKLRSSIINGVARGLLYLHEDSRLKVIHRDLKASNVLLDDEMNPKISDFGLARAFENGQNQANTNRVMGTYGYMAPEYAMEGLFSMKSDVFSFGVLVLEIVCGKKNSGFFLSEHGQSLLLYSWRMWCAGKCLELMDPLLENSYISNEVEKFIQIGLLCVQEAATTRPTMSTVMVLFASDVVTIPKPNKPAFSVGRMTSAETSASKGSKNISINDVSISSIVPR*	633

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu11g01311	632	Gene3D	Phosphorylase Kinase; domain 1	288	389	-	-
	Lapu11g01311	632	FunFam	Cysteine-rich receptor-like protein kinase 28	19	118	-	-
	Lapu11g01311	632	ProSiteProfiles	Gnk2-homologous domain profile.	16	119	IPR002902	-
	Lapu11g01311	632	ProSiteProfiles	Protein kinase domain profile.	314	590	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu11g01311	632	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	32	628	-	-
	Lapu11g01311	632	Pfam	Salt stress response/antifungal	31	116	IPR002902	-
	Lapu11g01311	632	Pfam	Salt stress response/antifungal	148	228	IPR002902	-
	Lapu11g01311	632	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	435	447	IPR008271	GO:0004672\|GO:0006468
	Lapu11g01311	632	FunFam	Cysteine-rich receptor-like protein kinase 10	129	230	-	-
	Lapu11g01311	632	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	287	389	-	-
	Lapu11g01311	632	SUPERFAMILY	Protein kinase-like (PK-like)	298	607	IPR011009	-
	Lapu11g01311	632	Gene3D	-	128	230	IPR038408	-
	Lapu11g01311	632	Gene3D	-	23	119	IPR038408	-
	Lapu11g01311	632	Pfam	Protein tyrosine and serine/threonine kinase	318	582	IPR001245	GO:0004672\|GO:0006468
	Lapu11g01311	632	Gene3D	Transferase(Phosphotransferase) domain 1	390	590	-	-
	Lapu11g01311	632	SMART	serkin_6	314	590	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu11g01311	632	ProSiteProfiles	Gnk2-homologous domain profile.	125	230	IPR002902	-
	Lapu11g01311	632	CDD	STKc_IRAK	320	581	-	-
	Lapu11g01311	632	FunFam	Liguleless narrow1	390	593	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu11g01311	Lapu-Chr11	15177680	15181135	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu11g01311	6	632	Receptor kinase-like Gene Family	AT4G05200	40.545	8.86e-164	483

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Lapu11g01311		PK_Tyr_Ser-Thr	3.2e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu11g01311	-		-	vum:124821055	1198.34