Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01309 ATGTTGGGAAAAAAACTACACCTGAGATCAATATGCTTTTGTTTCTTCTTATTGCTGAGTTTAAGACCACATGTTACGAAGGCACAAACACCCATTTTCGTGGGAAGTAACTGCCAAAACACAACCCAACAACCTCTCAGCAGTGTATACCAAACAAATCTTGAGAGAATTCTCACATGGGCATCTTCAGATGCAGCCACAAGCAAAGGTTATAACCACAAAAGCATAGGCAACAACAGTCCTGTGTATGGCCTCTATGATTGTCGTGGTGATGTGGATAGATACTTTTGTCAGTTCTGTGTCTCTACTGCTGCCAAAGAAGCATCTCAGCGTTGTCACAATATGGTCTCTGCTGTGGTTTGGTATGATTTCTGCGCTCTAAGGTACTCCAATGAGAGCTTTTTTGGGACTGTTTTAACAAACCCAACATGGTATCTTGGAGAGAAAAATATATCTAACATTAAAGATATTCAGAAAGGTGAGGGTTTTATGAGAAGTTTGATCAGAAAAGCAACTGTGGAGACCAACCAGTTGTACTATATGGATGGCTTCAATTTGAGTTCCACCGAGAGAAGGTATGGCTTGGTTCAATGCAATAGAGATCTCACAAATGAAGGGTGCAGACGGTGTTTGGAGATCACATTAGCCCAAGTTGCCAAATGTTGTGAACATAAATTAGGATGGTCGATTTGTACTGGAAGTTGTGTGATTAAGTATGAGGATCATATGTTTTACCAAACATCTTCAGTTGCTGAGCCTAATCTTCAAATAGCTAAAAAAGGAGGCAATAATAGGTCAAAAATCTTGATAATTAGCTCCAGTGTGACGGCGTCAATAGCTGTACTATGTTTGAGTGTATATTGGTGCAGGAGTAGAGCTAGAAAAGATCGGCTGATACCTCGTGTCGTTCGTCTCTCATCATATCACAATGTTCAAACTGGGGAAACACTGAATCCAGACCTTCCTTCAATCCCATTAATCACAATTATACAAAGTACTTATAACTTTTCTGAAGTATCAAAACTGGGGGAAGGTGGATTTGGCCCAGTATACAAGGGAATTCTGCCAAATGGAAGGCAAATTGCAGTTAAAAGGCTCTCAAAATTTTCTGGTCAAGGCTCAGAGGAATTCAATAATGAAGTGATGTTCATAGCGAAATTGCAACATCGCAACCTTGTGAAACTTCTTGCATGTTGCTTGGAGGAAAATGAAAAGATACTAGTATACGAGTATTTGCCAAATAAAAGCCTCGACTTTCACCTGTTTGATGATGAGAGAAAAAAACATTTTGATTGGAAATTAAGATTAAGCATTATCAACGGAATAGCAAGAGGTGTTTTATACCTTCATGAGGACTCTCGACTTAAAGTAATTCATAGAGATCTCAAAGCTAGCAATGTTCTATTAGACCATGACATGAATCCCAAAATATCAGATTTTGGATTGGCAAGGGCATTTGAAAGAGGACAGAACCAGGCAAATACAAAACGAGTAATGGGCACTTATGGATACATGGCTCCAGAGTATGCTATGGAAGGATTGTTTTCAGTGAAATCTGATGTTTTCAGCTTTGGAATTCTAGTTCTAGAAATCATTTGTGGGAGAAAGAACAGTGGATTCTATCTCTCAGAGCATGGTCAGACTCTTCTTTTATATGCTTGGAGAATATGGTGTGAAGGAAAATGTTTGGAAATGATGGATCCAACGCTGGAAAAATCCTTCGTAAGCAGTGAAGTTGAGAGATGCATACAGATTGGTTTGTTGTGTGTTCAAGAAGATCCAGAAGATAGATCAACTATGTCTGATGTTGTTGTAATGTTGGCTAGTGACGCAATGGCCCTTCCAAAACCCAAGCACCCACCATTTTCAGTTGGAAGAATGACCTCAGAGGAATCTACATCAAAAAGTTCCAAGAATCTTTCCATTAATGATGTAACAACCTCTATTATTGTACCGAGGTAA 1962 0.3914 MLGKKLHLRSICFCFFLLLSLRPHVTKAQTPIFVGSNCQNTTQQPLSSVYQTNLERILTWASSDAATSKGYNHKSIGNNSPVYGLYDCRGDVDRYFCQFCVSTAAKEASQRCHNMVSAVVWYDFCALRYSNESFFGTVLTNPTWYLGEKNISNIKDIQKGEGFMRSLIRKATVETNQLYYMDGFNLSSTERRYGLVQCNRDLTNEGCRRCLEITLAQVAKCCEHKLGWSICTGSCVIKYEDHMFYQTSSVAEPNLQIAKKGGNNRSKILIISSSVTASIAVLCLSVYWCRSRARKDRLIPRVVRLSSYHNVQTGETLNPDLPSIPLITIIQSTYNFSEVSKLGEGGFGPVYKGILPNGRQIAVKRLSKFSGQGSEEFNNEVMFIAKLQHRNLVKLLACCLEENEKILVYEYLPNKSLDFHLFDDERKKHFDWKLRLSIINGIARGVLYLHEDSRLKVIHRDLKASNVLLDHDMNPKISDFGLARAFERGQNQANTKRVMGTYGYMAPEYAMEGLFSVKSDVFSFGILVLEIICGRKNSGFYLSEHGQTLLLYAWRIWCEGKCLEMMDPTLEKSFVSSEVERCIQIGLLCVQEDPEDRSTMSDVVVMLASDAMALPKPKHPPFSVGRMTSEESTSKSSKNLSINDVTTSIIVPR* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01309 653 ProSiteProfiles Protein kinase domain profile. 336 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g01309 653 SMART serkin_6 336 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g01309 653 Pfam Protein tyrosine and serine/threonine kinase 340 606 IPR001245 GO:0004672|GO:0006468
Lapu11g01309 653 Pfam Salt stress response/antifungal 182 241 IPR002902 -
Lapu11g01309 653 Pfam Salt stress response/antifungal 38 131 IPR002902 -
Lapu11g01309 653 Gene3D - 147 244 IPR038408 -
Lapu11g01309 653 Gene3D - 32 134 IPR038408 -
Lapu11g01309 653 MobiDBLite consensus disorder prediction 620 639 - -
Lapu11g01309 653 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 302 411 - -
Lapu11g01309 653 Gene3D Phosphorylase Kinase; domain 1 300 411 - -
Lapu11g01309 653 CDD STKc_IRAK 342 607 - -
Lapu11g01309 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Lapu11g01309 653 SUPERFAMILY Protein kinase-like (PK-like) 322 632 IPR011009 -
Lapu11g01309 653 FunFam Cysteine-rich receptor-like protein kinase 10 142 244 - -
Lapu11g01309 653 Pfam Domain of unknown function (DUF3403) 609 653 IPR021820 GO:0004674
Lapu11g01309 653 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 37 649 - -
Lapu11g01309 653 ProSiteProfiles Gnk2-homologous domain profile. 139 244 IPR002902 -
Lapu11g01309 653 FunFam Cysteine-rich receptor-like protein kinase 28 34 133 - -
Lapu11g01309 653 ProSiteProfiles Gnk2-homologous domain profile. 29 134 IPR002902 -
Lapu11g01309 653 Gene3D Transferase(Phosphotransferase) domain 1 412 615 - -
Lapu11g01309 653 FunFam Liguleless narrow1 412 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01309 Lapu-Chr11 15163263 15166228 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01309 13 653 Receptor kinase-like Gene Family AT4G05200 42.496 2.95e-176 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lapu11g01309 PK_Tyr_Ser-Thr 6.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01309 - - gmx:100795922 943.725