Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01308 ATGAGATCAATATGTTTAACTTTCTTGTTATTGTTGAATTTCAGATCATTCGTTACAAAGGCTGAAGTACAGACATCCCTGGGAAGTAACTGCGAAAACACCACCCAACAAACTCTCAGCAGTACATACCAAACCAACCTCGATAGAATCCTCACATGGATGCCTTCTGATGCAGCCACAAGCAATGGGTATAACCACACCACCGTAGGCACCGATAGCTCTGTGTATGGCCTCTATGAATGTGGTGGTGGCTTGGCTGGATACTTTTGTCAATTTTGTATTTCCACTGCTGCAAAAGAAGCCCCTCAGCTCTGCCCCAATAGGGTATCTGCTGTGGTGTGGAATGATTACTGCGTTATAAGGTACTCAAATGAGGACTTCTTTGGGAAAGCTTTGACATACCCAACATGGCATACTCTTGGAACAAAAAACATATCCAACACGACAGAGATTCAGAAAGGTGACGATTTTGTGAGAAGTTTGATCAGAAAAGCAACTAATGGAACCAACCAGTTGTACTACAAGGATGGCTTCAATTTGAGTGCCACTGAGAGTAGGTATGGCGTGGTGCAATGCACTAGAGATCTCACAAATGAAGGGTGCAGACAGTGTTTGGAGGACATACTGGCTGAAGTTCCCAAATGTTGTGAACAAAAAATAGCATGGATGGTTTGGTCAGGAAGTTGTTTGATAAGGTATGATGATCATATGTTCTACCTTCTTAACAACCAACCACCTCCAGCTCCTGCGCCCAATGCACAAGATAAAAAAGGGCGTAGTAACAGGTCAAAAAAATTGATTATTACCTTCAGTGTGATTGGGCCACTAATTGTACTATGTTTCAGCCTATATTGCTTCTGGCACAGCAAAAGAGAGAGAAAAGGGCTTCCTCTACCTTCACTTCATAAAATTCAATCAGAGGAAATGTGGAACACAGACCTGCCTAGAATCCCATTAATCACAATTATACAGAGTACTGATAACTTTTCAGAAGCATCTAAATTAGGGGAAGGTGGGTTCGGCCCCGTTTACAAGGGAACTTTACCTGATGGAGGGCAAATTGCTGTCAAAAGACTCTCAAAATTTTCAGGTCAAGGCTCAGAGGAGTTTAATAATGAAGTAATGTCTATAGCTAAACTGAGGCATCGCAACCTTGTAAGACTTTTGGCATGTTGCTTAGAGGAAGATGAAAAGATACTTGTATACGAGTATTTGCCGAATAAAAGTATCGACTTTCACCTATTTGATGTTGAGAAAAGAAAACAAATCGATTGGAAACTAAGATTAAGCATTATCAATGGAATAGCAAGAGATTTTGGATTGGCAAGGGCATTTGAAGTAGGACAGAACCAGGGAAATACAAAACGAGTAATGGGCACTTATGGATACATGGCTCCGGAATATGCTATGGCAGGACTGTTTTCAGCGAAATCTGATGTTTTCAGCTTTGGAGTTCTCATTCTAGAAATCATTTGTGGGAGAAAGAATGGTGGATTCTACCTGTCAGACGGTCAAACTCTTCTTTCTTATGCTTGGAGAATATGGTGTGAAGGAAAATGTTTGGAATTGATGGATCCAATGCTGGAAAAATCCTTCATTGGCAGTGAGGTAGAGAGGTGCATACAGATTGGTTTGTTGTGTGTGCAAGAAGACGCAAAAGATAGACCAACCATGTCCGATGTTATTCTAATGATGGCGAGTGACTCACTGGCCCTTCCGAAACCCAAGCATCCAGCATTTTCGGTTGGAAGAATGGCCTCCGAGGGAATCTCTATATCAAGCAGTTCTAAGAATCTTTCTACTAATGATATAACATCCTCTATTACTTTACCGAGGTAA 1839 0.4133 MRSICLTFLLLLNFRSFVTKAEVQTSLGSNCENTTQQTLSSTYQTNLDRILTWMPSDAATSNGYNHTTVGTDSSVYGLYECGGGLAGYFCQFCISTAAKEAPQLCPNRVSAVVWNDYCVIRYSNEDFFGKALTYPTWHTLGTKNISNTTEIQKGDDFVRSLIRKATNGTNQLYYKDGFNLSATESRYGVVQCTRDLTNEGCRQCLEDILAEVPKCCEQKIAWMVWSGSCLIRYDDHMFYLLNNQPPPAPAPNAQDKKGRSNRSKKLIITFSVIGPLIVLCFSLYCFWHSKRERKGLPLPSLHKIQSEEMWNTDLPRIPLITIIQSTDNFSEASKLGEGGFGPVYKGTLPDGGQIAVKRLSKFSGQGSEEFNNEVMSIAKLRHRNLVRLLACCLEEDEKILVYEYLPNKSIDFHLFDVEKRKQIDWKLRLSIINGIARDFGLARAFEVGQNQGNTKRVMGTYGYMAPEYAMAGLFSAKSDVFSFGVLILEIICGRKNGGFYLSDGQTLLSYAWRIWCEGKCLELMDPMLEKSFIGSEVERCIQIGLLCVQEDAKDRPTMSDVILMMASDSLALPKPKHPAFSVGRMASEGISISSSSKNLSTNDITSSITLPR* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01308 612 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 17 437 - -
Lapu11g01308 612 ProSiteProfiles Gnk2-homologous domain profile. 25 127 IPR002902 -
Lapu11g01308 612 SUPERFAMILY Protein kinase-like (PK-like) 314 586 IPR011009 -
Lapu11g01308 612 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 298 404 - -
Lapu11g01308 612 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 445 570 - -
Lapu11g01308 612 ProSiteProfiles Gnk2-homologous domain profile. 133 238 IPR002902 -
Lapu11g01308 612 Gene3D - 24 127 IPR038408 -
Lapu11g01308 612 Gene3D - 135 238 IPR038408 -
Lapu11g01308 612 MobiDBLite consensus disorder prediction 593 612 - -
Lapu11g01308 612 FunFam Cysteine-rich receptor-like protein kinase 10 136 238 - -
Lapu11g01308 612 Pfam Salt stress response/antifungal 155 235 IPR002902 -
Lapu11g01308 612 Pfam Salt stress response/antifungal 31 124 IPR002902 -
Lapu11g01308 612 Gene3D Transferase(Phosphotransferase) domain 1 424 571 - -
Lapu11g01308 612 Gene3D Phosphorylase Kinase; domain 1 297 404 - -
Lapu11g01308 612 ProSiteProfiles Protein kinase domain profile. 329 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g01308 612 FunFam Cysteine-rich receptor-like protein kinase 28 27 126 - -
Lapu11g01308 612 Pfam Domain of unknown function (DUF3403) 567 612 IPR021820 GO:0004674
Lapu11g01308 612 Pfam Protein tyrosine and serine/threonine kinase 438 562 IPR001245 GO:0004672|GO:0006468
Lapu11g01308 612 Pfam Protein tyrosine and serine/threonine kinase 333 436 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01308 Lapu-Chr11 15152611 15155685 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01308 31 612 Receptor kinase-like Gene Family AT4G05200 36.858 1.04e-142 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lapu11g01308 PK_Tyr_Ser-Thr 4e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01308 - - pvu:PHAVU_011G194300g 1053.89