Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01306 ATGATCCCTATTAGGGTTTGTCTTAGCTTCATGTTCTTCCTTTTCACCACAACAAGTGCTCAAGCACCAATTTACATGTACAATTTTTGTGAGAACTCAACTCTTAGCCCTTCTTACAAAGCCAACGTTGACACCCTCCACTCATGGCTAACCTCAGACTCATACAAAAGTGATGGATATAACTTCACCACTGTAAACAACAGCGATGATAACAATGGTAACAGTGATGCTGTTTATGGATTGTACAGTTGCAGATACGACATCACAGGGTATTTTTGCCAGTTCTGCGTCACCACTGCTGCCAGTGAACTCTCTCGAAGGTGTCCCAACAGTGTAAGAGCTATCATATGGTATGACGTATGCATCATCCGTTATTCGAACCAGAGTTTCAATGGCAAAGTTAGTTTAAGCCCAACATGGAATATTACAGGACCCAGAAAAATCAAGGACTCAGCAGAATCTAAGAAAGCTGAGGATTCAATGGAGGGTTTGATTAGAAAAGCAACCATAGAGAGCAAGAATTTTTGGGCAGTGGATGAGTTTGATTGGGTTGACAATGAGAAAAGATATGGGTGGGTGCAGTGTGATAGGGATATTAAAAGTGATGAGTGTGGTCAGTGCTTGCATGCATTGTTAGACATATTTCCACAATGTTGTTCAACAAATGCACAGTGGGCAGTTTTTGGACCAAGCTGTGGCATCAGAATGGATGATGAAAAGTTCTACCATAGTTCAGGGAATGGAGGTATGAGCAAGTCAAGAAAGTTGATAATTTCCTTTAGTGTGTTAGGGTCTGTAGCTCTACTATGTTTAAGTGTCTACTGCTTCTGCTACAGGAAAGGAGTCAGAAAAGATAAAATGATGTTTGATGAGGAATCATTCAATGGAGATCTGCCTACAATCCCATTAATCGCAGTTCTACATAGTACTAATAACTTTTCAGAAGCATCTAAATTAGGGGAAGGTGGATTTGGCCCTGTTTACAAGGGAATTCTACCAGATGGAAGACAAATCGCAGTGAAAAGGCTCTCAAAATTTTCTGGTCAGGGCTCAGAGGAGTTCAAGAATGAAATCATGTTTATAGCTAAATTGCAACATCGTAACCTTGTGAGACTTTTGGGGTGCTGCTTGGAGGAAAATGAGAAGATACTTGTATATGAGTATATGTGTAATGCAAGCCTCGACTTTCACCTCTTTCGTGATGATGAGAAGAGAAAGCAACTTGATTGGAAACTAAGATTAAGCATTATCAATGGAATAGCAAGAGGTATTTTATATCTTCATGAAGACTCTCGGCTCAAAGTAATTCATAGAGATCTCAAAGCTAGCAATGTTCTATTGGATGATGAGATGAATCCCAAGATATCAGATTTTGGATTGGCCAGGGCATTTGAAATAGGACAGAACCAAGCAAATACAAAACGAGTAGTGGGCACCTATGGATACATGGCTCCAGAGTATGCTATGGAAGGATTATTTTCTGTGAAATCGGATGTTTTTAGCTTTGGAGTTCTGGTCCTAGAAATCATTTGTGGGAGTAAGAACAGTGGATTCCATCGATCAGAACATGGTCAAAGTCTTCTTTTATATGCTTGGAGCTTATGGTGTGCAGGAAAGTGTTTGGAATTGATGGATTCAGCTCTAATAAAATCCTTCATAGCTAGTGAGGTTGTCAAGTGCTTACACATTGGTTTGCTGTGTGTTCAACAAGATGCAGCAGATAGACCAACCATGTCTACGGTTGTTCTAATGCTAGGAAGTGACACAATGGACCTTCCAAAACCCAATCACCCTGCATTTTCTGTTGGAAAATTGACCTCTAATGAAACATCAACTTCAGGAAGTTGCAAGAACCTTTCTATTAATGATGTAACAGTCTCAGCCGTTTTAGCAAGGTAA 1899 0.4002 MIPIRVCLSFMFFLFTTTSAQAPIYMYNFCENSTLSPSYKANVDTLHSWLTSDSYKSDGYNFTTVNNSDDNNGNSDAVYGLYSCRYDITGYFCQFCVTTAASELSRRCPNSVRAIIWYDVCIIRYSNQSFNGKVSLSPTWNITGPRKIKDSAESKKAEDSMEGLIRKATIESKNFWAVDEFDWVDNEKRYGWVQCDRDIKSDECGQCLHALLDIFPQCCSTNAQWAVFGPSCGIRMDDEKFYHSSGNGGMSKSRKLIISFSVLGSVALLCLSVYCFCYRKGVRKDKMMFDEESFNGDLPTIPLIAVLHSTNNFSEASKLGEGGFGPVYKGILPDGRQIAVKRLSKFSGQGSEEFKNEIMFIAKLQHRNLVRLLGCCLEENEKILVYEYMCNASLDFHLFRDDEKRKQLDWKLRLSIINGIARGILYLHEDSRLKVIHRDLKASNVLLDDEMNPKISDFGLARAFEIGQNQANTKRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVLVLEIICGSKNSGFHRSEHGQSLLLYAWSLWCAGKCLELMDSALIKSFIASEVVKCLHIGLLCVQQDAADRPTMSTVVLMLGSDTMDLPKPNHPAFSVGKLTSNETSTSGSCKNLSINDVTVSAVLAR* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01306 632 SUPERFAMILY Protein kinase-like (PK-like) 297 585 IPR011009 -
Lapu11g01306 632 CDD STKc_IRAK 319 585 - -
Lapu11g01306 632 ProSiteProfiles Gnk2-homologous domain profile. 136 241 IPR002902 -
Lapu11g01306 632 Gene3D - 143 241 IPR038408 -
Lapu11g01306 632 Gene3D - 23 130 IPR038408 -
Lapu11g01306 632 FunFam Liguleless narrow1 389 593 - -
Lapu11g01306 632 ProSiteProfiles Protein kinase domain profile. 313 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g01306 632 Pfam Protein tyrosine and serine/threonine kinase 317 582 IPR001245 GO:0004672|GO:0006468
Lapu11g01306 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Lapu11g01306 632 Gene3D Phosphorylase Kinase; domain 1 276 388 - -
Lapu11g01306 632 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 278 388 - -
Lapu11g01306 632 ProSiteProfiles Gnk2-homologous domain profile. 21 130 IPR002902 -
Lapu11g01306 632 Gene3D Transferase(Phosphotransferase) domain 1 389 594 - -
Lapu11g01306 632 SMART serkin_6 313 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g01306 632 Pfam Domain of unknown function (DUF3403) 587 632 IPR021820 GO:0004674
Lapu11g01306 632 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 92 628 - -
Lapu11g01306 632 Pfam Salt stress response/antifungal 32 128 IPR002902 -
Lapu11g01306 632 Pfam Salt stress response/antifungal 158 237 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01306 Lapu-Chr11 15134319 15141149 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01306 10 632 Receptor kinase-like Gene Family AT4G05200 41.291 1.28e-171 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lapu11g01306 PK_Tyr_Ser-Thr 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01306 - - var:108339138 1059.67