Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01269 ATGAGTCCTCCAGCTGAATCCAACATGATAGAAGATGGCAAGCCAGAAAATGGCACAGACCAAGTCGTAGCTCGCTTCGAGGAGTTCTGCAAGAATGAATTAGCATTGGAAGAGAAAAGCTGTAAAGAAGCAATCAATTTGCTAGGAGAAACCAAACATATTCTTCAGACAAATTTTTCATCAATGGGGAATGGAACGTCTGAAGAAGCAGAGCGGTATTGGTTTGCTTTTATTTCGTACTCTGTCAAGAAATTGATCCACAGTAATGAGGAGGCCGGGAAGGAAGAGAATGTGAACACTGGGTTTAGCTTGTGTCGTATATTGAGAGCTGCTAAGCTCAACATTGCAGATTTTTTCAAAGAACTTCCACAGTTTGTTGTTAAGGCTGGTCCAACTTTAAGTAATCTATATGGAACAGATTGGGAAAACAGGCTGGAGGCAAAGGAGATACATGCCAATGCGATTCACTTAAAGATTCTTAGCAAGTACTATAAACGTGTATTTGGAGAGTTCTTTGTGACAACTGACTCAAATGCTGAAAAGAATTCATCTGTTATTGTTCATGCATCTGAATACCATCGATTTGGATGGTTGCTTTTCTTGGCTCTCCGTGTGCATGCTTTCAGCCGCTTCAAAGACTTGGTGACTTGCACCAATGGTCTAATTTCAATCTTGGCTATCTTAATTATTCATGTTCCTACACGATTTCGGAATTTCAACATTCATGACTCCTCACGCTTTGTTAAGAAAAATAACAAAGGTGTGGACCTCCTTGCTTCACTTTGCAACATATACACCACTACTGAAGATGAGTTGAGGAAAACAATGGAGAAAGCCAATAATGTAATAGCAAATATATTGAAGAAGAAGCCCTGCATGGCATCTGAATGCGAGACTGAAAACCTTGAAAATATCGATAAAGATGGTTTGACCTATTTTAAAGACCTGATGGAAGAGTCGTCTCTACCTTCTAGTTTAAATTTATTAGAAAAAGATTATGATTACATGATTCGCAACAAGAGTGAACTGGATGAGAGGTTATTTATTAATGAGGATGACAGCCTATTAGCTTCAGGAAGCTTGTCTGGAGGTTCTATTTCAGCAGGTGGTGTAAAGAGGAAATTTGATTCACTGGCATCACCTGCTAAGACCATTACTAGTCCACTCTCACCTCACCGCTCTCCCTCGTCACATGCTAATGGCATCCCTGGTAGCGCAAATTCAAAGATAGCAGCCACCCCTGTAAGCACAGCAATGACTACAGCAAAGTGGCTTCGAACTGTCATTTCTCCACTTGCACCAAAGCCCTCACCAGAGCTTGAACGATTTCTAACATCATGTGATAGGGATGTTACAAGTGATGTGGTGCGCAGAGCACAGATTATATTGCAGGCTACATTTCCAAGTAGTCCACTTGGAGAACTATGTGTAACTGGAAGCCTGCAAAGTGCAAATCTAATGGACAATATATGGGCAGAACAACGAAGATTGGAAGCACTGAAGTTATACTACAGGGTATTAGAGGCTATGTGCAGAGCTGAAGCTCAAGTTTTTCATGCAACTAATTTGACCTCTCTTCTTACGAATGAGAGGTTCCATCGGTGTATGCTTGCTTGTTCTGCAGAATTAGTCCTGGCAACTCATAAGACTGTAACAATGTTGTTCCCTGCAGTACTTGAGAGGACTGGAATTACAGCCTTTGATCTTAGCAAGGTGATTGAAAGTTTCATTAGACATGAAGAATCTCTGCCAAGAGAATTGAGGCGACATCTGAATTCATTGGAAGAACGACTTTTGGAAAGCATGGTGTGGGAAAAGGGTTCTTCAATGTATAATTCTCTGGCAGTTGCCAGACCTTCCCTTTCTGCAGAGATAAATCGCCTGGGACTGTTAGCTGAACCAATGCCATCATTGGATGAAATTGCAATGCATATTAACTTCTCTTGTGGAGGGCTTCCACCAGTGCCTGCCTTGCCCAAGCTTGAAAGTTCACCAACTCGGAATGGAGATATCAGATCACCAAAGCGAAATGTGTTGATGGAAAGAAATTCTTTCACATCACCTGTGAAAGATCGGCTTCTTCCCTTCAGCAACCTTAAGTCAAAACTACCCCCACCTCCTTTGCAGTCTGCATTTTCCAGCCCCACAAAGCCAAATCCAGCAGGTGGAGGGGAAACTTGTGCAGAAACTGGGATTAACATCTTTTTCGGCAAGATCATTAAGTTGGGAGCAGTCAGAATTAGTGGCATGGTTGAAAGACTACAATTATCTCAGCAGATAAGGGAGAATGTATACTGTCTTTTCCAGCGGATCCTAAATCAACGGACATCTCTCTTCTTCAACCACCATATTGATCAAATCATCTTGTGTTGTTTCTATGGAGTTGCAAAGATTTCACAACTGAACCTAACTTTTAGAGAGATAGTATACAACTACAGAAAGCAACCACATTGCAAACCACAAGTTTTCCGCAGTGTATTTGTTGATTGGTCATTAGCACGCAGAAATGGGAGAACAGGACAGGAGCATGTTGACATTATCACCTTCTACAATGAAATGTTTATTCCCTCAGTAAAGCCACTGCTGGTTGAACTTGACCCTTCTGGAGCAAATACTAAAAGTGACCGAATACCTGAAGTTAATAAAAATGACGGCCAGTTAGCTCAATGTCCAGGATCTCCTAAAATATCATCTTTCCCTACACTTCCCGATATGTCTCCAAAAAAAGTATCTGCTACACACAATGTATATGTCTCTCCATTACGATCGTCCAAGATGGATGCTCTAATATCACACAGCTCAAAAAGCTATTATGCATGTGTTGGGGAGAGCACTCATGCTTATCAGAGCCCTTCAAAAGACCTGACTGCCATCAATAACCGTTTGAATGGCAACAGGAAGGTGAGAGGACCCCTGAATTTTGATGATGTTGATGTGGGCGTGGTTAGTGATTCTATGGTTGCAAACAGCCTCTATCTGCAGAATGGAAGTTGTGCATCATCATCAGGTGCACCAGTGAAATCAGAGCAACCTGACTCTTGA 3042 0.4168 MSPPAESNMIEDGKPENGTDQVVARFEEFCKNELALEEKSCKEAINLLGETKHILQTNFSSMGNGTSEEAERYWFAFISYSVKKLIHSNEEAGKEENVNTGFSLCRILRAAKLNIADFFKELPQFVVKAGPTLSNLYGTDWENRLEAKEIHANAIHLKILSKYYKRVFGEFFVTTDSNAEKNSSVIVHASEYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPTRFRNFNIHDSSRFVKKNNKGVDLLASLCNIYTTTEDELRKTMEKANNVIANILKKKPCMASECETENLENIDKDGLTYFKDLMEESSLPSSLNLLEKDYDYMIRNKSELDERLFINEDDSLLASGSLSGGSISAGGVKRKFDSLASPAKTITSPLSPHRSPSSHANGIPGSANSKIAATPVSTAMTTAKWLRTVISPLAPKPSPELERFLTSCDRDVTSDVVRRAQIILQATFPSSPLGELCVTGSLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQVFHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVARPSLSAEINRLGLLAEPMPSLDEIAMHINFSCGGLPPVPALPKLESSPTRNGDIRSPKRNVLMERNSFTSPVKDRLLPFSNLKSKLPPPPLQSAFSSPTKPNPAGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYCLFQRILNQRTSLFFNHHIDQIILCCFYGVAKISQLNLTFREIVYNYRKQPHCKPQVFRSVFVDWSLARRNGRTGQEHVDIITFYNEMFIPSVKPLLVELDPSGANTKSDRIPEVNKNDGQLAQCPGSPKISSFPTLPDMSPKKVSATHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGPLNFDDVDVGVVSDSMVANSLYLQNGSCASSSGAPVKSEQPDS* 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01269 1013 Pfam Retinoblastoma-associated protein B domain 732 859 IPR002719 GO:0005634|GO:0051726
Lapu11g01269 1013 SUPERFAMILY Cyclin-like 421 616 IPR036915 -
Lapu11g01269 1013 SMART DUF3452_2 83 231 IPR024599 -
Lapu11g01269 1013 Gene3D - 696 883 - -
Lapu11g01269 1013 FunFam Retinoblastoma-related protein 1 682 894 - -
Lapu11g01269 1013 Pfam Retinoblastoma-associated protein A domain 413 614 IPR002720 GO:0005634|GO:0051726
Lapu11g01269 1013 SUPERFAMILY Cyclin-like 730 869 IPR036915 -
Lapu11g01269 1013 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 20 1011 IPR028309 GO:0006357|GO:0051726
Lapu11g01269 1013 FunFam Retinoblastoma-related protein 1 416 604 - -
Lapu11g01269 1013 Gene3D - 416 604 - -
Lapu11g01269 1013 Pfam Domain of unknown function (DUF3452) 99 231 IPR024599 -
Lapu11g01269 1013 Coils Coil 269 289 - -
Lapu11g01269 1013 SMART RB_A_2 413 614 IPR002720 GO:0005634|GO:0051726
Lapu11g01269 1013 MobiDBLite consensus disorder prediction 704 723 - -
Lapu11g01269 1013 FunFam Retinoblastoma-related protein 1 192 350 - -
Lapu11g01269 1013 CDD CYCLIN_AtRBR_like 732 863 - -
Lapu11g01269 1013 Gene3D - 192 350 - -
Lapu11g01269 1013 MobiDBLite consensus disorder prediction 385 408 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01269 1 1013 Core Cell Cycle Gene Families AT3G12280 69.380 0.0 1399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Lapu11g01269 RB_A 1.8e-64 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01269 K04681 - gmx:100777805 1830.84