Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01253 ATGAACATGTTAGGCCTTAGAGACCTGGTTCTCATAGCTCCAACCCCTTCTCAACTTCACCACCATCAACACCAACACCAACACCAGCACCAGCACCACCCCATTTCAGCAGAACACCATCCTAACCTTCCCCTGCCTTCTCCAGCCTCTCTCAGCGTTGGCCTTGGTATTTTCCCTCTCCTAACAGTTCCACACACCAATGATGTTCATGATCAGGTTCAAGACTGTGCCAACAACACCAACAACACCACCAACCACAACACCAACTATTGGAACCTCAAGATGTGTGGTGTCTCAGAAGTGAATTCCACAAGAAAAGGTGTCATGAACGTGGAAGATGAGGGGACCAACAAGCATGTGATGGAGAGTGAGGAGAGTGGTGAGTTTAGGGTGTGCCAGGATTGTGGCAATAGGGCCAAGAGGGATTGCAGCTACAAAAGGTGCAGGACTTGTTGCAAAGGACGTGGCTTTGATTGCAGCACTCACGTGAAGAGCACGTGGGTCCCCGCCTCTCTGAGACGCAGTGGTGGTAATAGTGGTAGTGATGGTAACGGTGGTGACGGAGATGGTGATGGTGGTGCTTCTAAGAGGCTAAGAACAGTAGGGTCATCAAAGAATGTTGCAGCAACTTCTCATAGTTCCACTTCCAATGCTACCCCAACAAAGAGCTTTAGCATAGACACTAGCTCTTGTCAACAAGATGCTGGTTTCAAGCAATCTTTGCCACGGCATGTGCGTGCACCTGCTGTGTTTAGGTGCCATAGAGTGTCTGCTATTGGGAGTGGTGAAGATGAGATTGCGTACTTGGCCACAGTGCATATCAGTGGCCATGTGTTCAAGGGGTTTCTGTATGATCACGGTGCTGATGCCAGAAATGATGTGCCTAGCGTCTCTGAACTGCAACTGGGAAACAATGGAAGTGGAAAGAGTAATAATAGGGAATGTTCTTCTGCAATTGGGGTTCCAACCAGTGCTTACCCTGCTTCTGTTTGCTGA 996 0.49 MNMLGLRDLVLIAPTPSQLHHHQHQHQHQHQHHPISAEHHPNLPLPSPASLSVGLGIFPLLTVPHTNDVHDQVQDCANNTNNTTNHNTNYWNLKMCGVSEVNSTRKGVMNVEDEGTNKHVMESEESGEFRVCQDCGNRAKRDCSYKRCRTCCKGRGFDCSTHVKSTWVPASLRRSGGNSGSDGNGGDGDGDGGASKRLRTVGSSKNVAATSHSSTSNATPTKSFSIDTSSCQQDAGFKQSLPRHVRAPAVFRCHRVSAIGSGEDEIAYLATVHISGHVFKGFLYDHGADARNDVPSVSELQLGNNGSGKSNNRECSSAIGVPTSAYPASVC* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01253 331 NCBIfam LRP1 C-terminal domain 241 287 IPR006511 -
Lapu11g01253 331 NCBIfam putative zinc finger domain, LRP1 type 131 172 IPR006510 -
Lapu11g01253 331 MobiDBLite consensus disorder prediction 17 48 - -
Lapu11g01253 331 Pfam Domain of unknown function (DUF702) 131 289 - -
Lapu11g01253 331 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 20 317 IPR007818 GO:0003700|GO:0006355
Lapu11g01253 331 MobiDBLite consensus disorder prediction 199 225 - -
Lapu11g01253 331 MobiDBLite consensus disorder prediction 170 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01253 Lapu-Chr11 14570028 14574505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01253 1 318 C2H2 Transcription Factor Family AT5G12330 41.033 1.04e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lapu11g01253 DUF702 3e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01253 - - gmx:100790311 530.02