Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu11g01240 | ATGCAACATGCTGGGAACAAGTTTTGTGCTGATTGTGGAACTCCAGAGCCAAAATGGATCAGATCTTCAAGTCTTGGAGTATTTATTTGCATCAAGTGTTCAGGCATTCATAGAAGTCTAGGAGTCCACATATCAAAGGTTTTATCATTGAAGCTAGATGAATGGACAGATGAACAAGTTGATGCATTAGCAAAATTAGGAGGAAATACACTATTAAATAAGAAGTACGAAGCTTGTCTCCCAAGTAACATGAGAAAACCAAAACCACATTCTTCCATTGAAGAGCGCTCTGAATTTATTCGGAGAAAATATGAGTTGCAGCAATTTATGGGATGTGATGACAATATGACAGCAGGCCCCATTGTCCCATCTCAAGGAAGAAGTATATCATTTGCTCAATGCAGCTCTTCATACTATCATGCATTTATGGACAAAAAACCATCGGAAAAACATCCAAGCAAAACTCGTATTGGTAATGCATTCCGAAATAGTTGGGGAAGAAAAGATTCTGAGCATAAGGCAAAGAAAAGTACCTCATTGGCAGGTATGGTTGAATTTGTTGGGTTGATTAAGGTTAATGTGGTTAAAGGCACTCACCTAGCTGTTCGAGACGTAATGACTAGTGATCCTTATGTCATCCTTTCTTTGGGTCACCAATCAGTAAAAACACGAGTCATAAAGAACAATTTGAATCCAGTTTGGAATGAAAGTCTAATGCTTTCAATTCCAGAAAATATTCCTCCTCTAAAAGTGCTTGTGTATGACAAGGATACATTTTCAACTGATGATTTTATGGGAGAGGCTGAAATAGACATTCAACCTCTAGTTATAGCAGCAAAGGCTTATGAGAAATCGAATATCAACGAGTCTATGCAGCTTGGTAAATTTGTAGCAAGCAAGGACAACACCCTTGTTAGAGATGGTATCATATCCCTTGATGAAGGCAAGATCAAACAGGAGATCTCAGTGAGACTACAAAATATTGAGAGAGGTGAACTTGAGCTTGAGCTTGAGTGTGTTCCTCTCACTCAATAA | 1035 | 0.3836 | MQHAGNKFCADCGTPEPKWIRSSSLGVFICIKCSGIHRSLGVHISKVLSLKLDEWTDEQVDALAKLGGNTLLNKKYEACLPSNMRKPKPHSSIEERSEFIRRKYELQQFMGCDDNMTAGPIVPSQGRSISFAQCSSSYYHAFMDKKPSEKHPSKTRIGNAFRNSWGRKDSEHKAKKSTSLAGMVEFVGLIKVNVVKGTHLAVRDVMTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVIAAKAYEKSNINESMQLGKFVASKDNTLVRDGIISLDEGKIKQEISVRLQNIERGELELELECVPLTQ* | 345 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu11g01240 | 344 | PRINTS | HIV Rev interacting protein signature | 6 | 25 | IPR001164 | GO:0005096 | |
| Lapu11g01240 | 344 | PRINTS | HIV Rev interacting protein signature | 47 | 68 | IPR001164 | GO:0005096 | |
| Lapu11g01240 | 344 | PRINTS | HIV Rev interacting protein signature | 26 | 43 | IPR001164 | GO:0005096 | |
| Lapu11g01240 | 344 | FunFam | ADP-ribosylation factor GTPase-activating protein AGD12 | 186 | 344 | - | - | |
| Lapu11g01240 | 344 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 185 | 279 | IPR035892 | - | |
| Lapu11g01240 | 344 | FunFam | stromal membrane-associated protein 1 isoform X1 | 1 | 115 | - | - | |
| Lapu11g01240 | 344 | CDD | ArfGap | 5 | 104 | - | - | |
| Lapu11g01240 | 344 | Gene3D | C2 domain | 187 | 344 | IPR035892 | - | |
| Lapu11g01240 | 344 | ProSiteProfiles | C2 domain profile. | 170 | 286 | IPR000008 | - | |
| Lapu11g01240 | 344 | SMART | arf_gap_3 | 1 | 117 | IPR001164 | GO:0005096 | |
| Lapu11g01240 | 344 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 2 | 110 | IPR037278 | - | |
| Lapu11g01240 | 344 | SMART | C2_3c | 189 | 284 | IPR000008 | - | |
| Lapu11g01240 | 344 | Pfam | C2 domain | 189 | 275 | IPR000008 | - | |
| Lapu11g01240 | 344 | CDD | C2_ArfGAP | 187 | 331 | - | - | |
| Lapu11g01240 | 344 | Gene3D | Arf GTPase activating protein | 1 | 117 | IPR038508 | - | |
| Lapu11g01240 | 344 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 1 | 344 | IPR044518 | GO:0005096|GO:0005543 | |
| Lapu11g01240 | 344 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 1 | 117 | IPR001164 | GO:0005096 | |
| Lapu11g01240 | 344 | Pfam | Putative GTPase activating protein for Arf | 2 | 110 | IPR001164 | GO:0005096 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lapu11g01240 | Lapu-Chr11 | 14393670 | 14397137 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lapu11g01240 | 1 | 344 | C2H2 Transcription Factor Family | AT4G21160 | 48.256 | 7.90e-116 | 337 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lapu11g01240 | K12486 | - | gmx:100789552 | 631.328 |