Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01216 ATGGAGTCCTCTGTTGATGTTTTATCAACTGCAAAACGTCCCAGACCAATCGGATCTTCTCCTGACCCTGGTGGAGACAAAAGACTGAAATTTTCGAGTTATAGCCTGCCATACCCAACACATGATAAGACCTCGTATGTTGTTGATTACAACAATCCATTTGCAATATCTGATGTTCTGGATAGTTTAGAGAGTGGAAAATTTGGAAGTGTCACAAAGGACATAGAGGACCTTATAGCCCAAAAAATGCAAATATTGGGTCCTTACTTTGTTAAATATCCCATACTAGTGGATCAATGGGCGAAAGTGGCAATGAAACATGATGAAGAAACTCCTAAGTTGGAAAATCAAGAAGTTACTGTTTTGACGCATCAAAATGTCATAGATCTGGAGGGGGAACACACCATAAAGGATGTCCCTGTCCCTGCAACACAAGATCATGTTGTGATTATTGATTCAGATGAGGAAGATGATAGAGATAAAAAATCTATGGTCCCATTTCATGAAGTTTTGTTGCCGAGACCAGTTGCACCGTCTCCTGCATTGAAGATAACTGGGTATGAACCTCCCATTCCTTACCCGGAAGAAAGAGATCTAAAAATTGAGACAAGTATGGCTGGTAAAGGTAGCAGCAGTCCGAATGATAAAGGTGTTTATATTGGTGTACAGGAAGAGGAAGAAGATGAGGTTGATACCGAAGATGATGGTCTAGAAGATATTTGGAAGGAGATGTCAATGGCAATAGAATGTTCCAAAGATGTTTCAGTTGATTCTCAGCCAGGTGAAGAAGAAGAAGAAGAAGATGACGATGACTGTGATCATTCTTTTGTCTTAAAAGACGATCTTGGTTATGTTTGTCGTGTTTGTGGGGTTATTGACCGGGGAATTGAAACCATATTTGAGTTTCAGTACAAGGTTAAACGCAGCACAAGAACTTATGCGTCTGATTCATTGAATACCAAAAAAGCAGATGTATTTGGAATTAATGTTGTTGAAGATGACCTCATAGTTACTGAAATCCCAGCGCATCCTAGACACATGAAACAGATGAAACCCCATCAAGTTGAAGGATTCAATTTTCTTGTTAGAAATCTTGCAGGTGACCATCCTGGTGGCTGCATCTTAGCCCATGCTCCAGGATCTGGGAAAACATTCATGATAATCAGTTTCATGCAAAGTTTTCTGGGCAAGTATCCGAATGCAAGACCCTTAGTGGTGCTTCCTAAGGGAATATTGTCAACATGGAAAAAGGAGTTTCAAATATGGCAGGTGGAGGACATACCTCTATATGACTTTTACACAGTGAAGGCAGATAGTAGAAGTCAACAACTGGAAGTGTTGAAGCTATGGGTGGAGAAGAAGAGTATCCTTTTCTTAGGATACAAACAGTTCTCCTCTATTGTATGTGATAATGGGGCCAACAGTACATCATCATCTTGCCAAGATATTTTGCTCAAGGTTCCTTCAATTCTTATTTTAGATGAGGGACACAATCCTAGGAACGAAAACACAGATATGGTACAGTCCCTTGCAAAAGTTCAAACGCCTAGAAAAGTTGTGCTGTCAGGAACCCTTTATCAAAATCATGTCAGGGAGGTGTTTAACATTTTAAATCTTGTTCGACCAAAATTTTTGAAGATGGAAACATCTAAGCCTATTGTGAGGCGCATTAAAAGTAGAGTTTATATACCAGGGACGAGAAGCTTCTGTGACTTAGTTGAAGACACTTTGCAGAAGGACACTGATTTTAAAAGGAAAATAGCTGTTATACAAGATTTGCGCGAGATGACTAGCAATGTACTTCACTATTATAAAGGGGATTTTCTTGACGAGCTTCCTGGTCTTGTTGATTTTACTGTGGTGCTCACTCTTAGCCCTAGACAGAAGCCTGAAGTAGGGAAAATAAAAAAGCTATCTACAAGAAAGTTCAGGATATCTTCTGTTGGAAGTGCTGTCTATCTGCATCCTAAACTGAAACCACTAGCAGAAAACTGTGGTGAAAATTCTATATCTGATCATGTAATGGATGATTTGATAGATAAACTGGATATTAAAGATGGTGTGAAGTCAAAGTTTTATTACAATATGCTAAATCTGTGTGAATCAGCAGGGGAGAAGCTTCTAGTTTTCAGTCAGTATCTGTTACCTTTGAAATATTTAGAAAGGTTGACCATGAAGTGGAAAGGCTGGAGTCTTGGAAGAGAAATTTTTGTAATCTCAGGAGAATCAAGCGCGGAGCACCGAGAATGGTCCATGGAAAAATTTAACAAATCTTCTGAAGCCAAAGTCTTCTTTGGCTCAATCAAGGCATGTGGAGAGGGTATATCACTGGTTGGGGCCTCTCGCATAATTATCTTGGACGTTCATCTCAATCCGTCAGTTACACGTCAAGCTATAGGTCGTGCGTTCAGACCCGGCCAGACGAAGAAGGTATTTGTGTATCGTTTAGTATCTGCTGATTCTCCAGAAGAGGAAGACCACCATGCATGTTTCAAAAAAGAATTAATTTCAAAAATGTGGTTTGAATGGAATGAATATTGCGGTGATCGAGCTTTTGAAGTTGAGGCAGTTGAGGTGAAAGAGTGTGGTGATCAATATCTTGAAAGTCCACTCTTAGGGGAGGATGTAAAAGCTTTATATAAAAGGTGA 2649 0.3964 MESSVDVLSTAKRPRPIGSSPDPGGDKRLKFSSYSLPYPTHDKTSYVVDYNNPFAISDVLDSLESGKFGSVTKDIEDLIAQKMQILGPYFVKYPILVDQWAKVAMKHDEETPKLENQEVTVLTHQNVIDLEGEHTIKDVPVPATQDHVVIIDSDEEDDRDKKSMVPFHEVLLPRPVAPSPALKITGYEPPIPYPEERDLKIETSMAGKGSSSPNDKGVYIGVQEEEEDEVDTEDDGLEDIWKEMSMAIECSKDVSVDSQPGEEEEEEDDDDCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYASDSLNTKKADVFGINVVEDDLIVTEIPAHPRHMKQMKPHQVEGFNFLVRNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQIWQVEDIPLYDFYTVKADSRSQQLEVLKLWVEKKSILFLGYKQFSSIVCDNGANSTSSSCQDILLKVPSILILDEGHNPRNENTDMVQSLAKVQTPRKVVLSGTLYQNHVREVFNILNLVRPKFLKMETSKPIVRRIKSRVYIPGTRSFCDLVEDTLQKDTDFKRKIAVIQDLREMTSNVLHYYKGDFLDELPGLVDFTVVLTLSPRQKPEVGKIKKLSTRKFRISSVGSAVYLHPKLKPLAENCGENSISDHVMDDLIDKLDIKDGVKSKFYYNMLNLCESAGEKLLVFSQYLLPLKYLERLTMKWKGWSLGREIFVISGESSAEHREWSMEKFNKSSEAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTKKVFVYRLVSADSPEEEDHHACFKKELISKMWFEWNEYCGDRAFEVEAVEVKECGDQYLESPLLGEDVKALYKR* 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01216 882 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 364 543 IPR014001 -
Lapu11g01216 882 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 219 881 IPR044567 GO:0080188
Lapu11g01216 882 MobiDBLite consensus disorder prediction 252 272 - -
Lapu11g01216 882 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 330 545 IPR027417 -
Lapu11g01216 882 CDD SF2_C_SNF 695 817 - -
Lapu11g01216 882 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 489 844 IPR027417 -
Lapu11g01216 882 SMART helicmild6 721 806 IPR001650 -
Lapu11g01216 882 Pfam Helicase conserved C-terminal domain 697 805 IPR001650 -
Lapu11g01216 882 Gene3D - 613 864 IPR027417 -
Lapu11g01216 882 SMART ultradead3 346 556 IPR014001 -
Lapu11g01216 882 Gene3D - 319 563 IPR038718 -
Lapu11g01216 882 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 695 858 IPR001650 -
Lapu11g01216 882 MobiDBLite consensus disorder prediction 1 28 - -
Lapu11g01216 882 Pfam SNF2-related domain 370 547 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01216 Lapu-Chr11 14183038 14190351 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01216 703 834 RAD5 or RAD16-like Gene Family AT5G43530 33.333 1.91e-14 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu11g01216 SNF2_N 2e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01216 K10875 - gmx:100780454 1458.35