Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01214 ATGCAGATACTTGGGCCTTACTTTGCAAAGTATCCCGGACTTCTTAATCAATTCATGAATATGGTAACTGACCACGATGAAGACACTCCTAAGTTCGAAGATCAACTAGACACTGGTTTGACATACCATGATGACATAGATTTGGAGGGGAAAAACACCGAGAAGGATGTTCGTGCAGCTTCAATTCCTGCTGTTATTCACATTGATTCAGATGTGGAAGACGATGAAGATGAAAAATCTGTTGTTCCATTTCACTATGCTTCAGACGCGGAAGATGATAGACATAATAAATCTAATGTTCCATTTCATGAAGCTTCAGAAGAGGAAGAAGATAGACACGATAAATCTATTGTTCCATTTCGTGAAGCTTCAGAAGAAGATGATAGACATAGTAAATCTAATGTTCCGTTTCATGAAGTTGTGTTTAACATGCTCCATCTAGGGATGATGATAGGAATCAAAGTATCATACAAGGGAAGCTTGGTCATTGGGCAGTTGATGGGATTGAAAATGAAAATAATGGATAGCCATTGTACTCCCACTCCTTCCCGTCGCAAAAGTAAAGATCGGAAAATTGAGAGTATGGCGGGTAAAGGTACCCCTAGTGGAGATAAAGGTGTTTATATTGGTGTAAAGGAGGAAGAGGATCACCAGGTTGATGCCGCAGATAATGAGGGTCTAGAAGATATTTGGAAGGAGATGTCAATGGCAATGGAGTGTTCCAAAGTTGTTTCCTCGAATCCTCTGCCAGATGAAGAAGTAGAAAGAGACCATGAGGAAGTAGAAAGAGATGAGGACTGTGATCATTCTTTTATTTTAAAAGATGATATTGGTTATGTTTGTCGGGTTTGTGGCATTATTGACCGAAGAATTGAAACCATATTTGAGTTTCAGTACAAGGTTAAACGGAGCACGAGGACTTATGCATCTGACTCCTGTAATACCAAAGCAAAAGCAGATGTATTTGCAATTAATGTTGCTGAAGATGATCTCATGGTAACTGAATTCTCAGCACATCCTAGACACATGAAACAGATGAAACCTCATCAAGTTGATGGATTCAATTTTCTTGTCAGAAATCTTGCGGGTGATCATCCTGGTGGCTGCATCTTAGCACATGCTCCAGGATCAGGGAAAACATTCATGATAATCAGTTTCATGCAAAGTTTTCTAGGCAAGTATCCGAATGCAAGACCCTTGGTGGTGCTTCCAAAGGGAATATTGTCAACATGGAAAAAGGAGTTTCAAAGATGGCAAGTGGAGGACATACCTCTGTACGACTTTTACACAGTGAAGGCAGATAGTAGAAATCAACAACTGGAAGTATTGAAGCAATGGGTGGAGAAGAAGAGTATTCTTTTCTTAGGATACAAACAGTTCTCCTCTATTGTCTGTGATAATGGGACCAACATTACTTCTTTATCTTGCCAAGATATTTTACTCAGGGTTCCTTCAATTCTCATTTTAGACGAGGGGCATAATCCAAGGAATGAAAACACAGACATGGTTCAATCCCTTGCAAAAGTTCACACACCTAGAAAAGTTGTTCTGTCAGGAACACTTTATCAAAATCATGTCAGGGAGGTGTTTAACATTCTAAATCTCGTTCGTCCAAAATTTTTGAAGATGGAAACATCTAAGCCTATTGTGCGGCGCATTGAAAGTAGAGTTCATATCCCAGGAGTGAGAAACTTTCATGATCTTGTTGAAAACACTTTGAAGGGCACAGATTTCAAAGAGAAAGTGGCCGTCATACGAGATTTGCGCGAGATGACAGGCAATGTACTTCATTATTATAAAGGGGATTTTCTTGATGAGCTTCCCGGTCTCGTTGATTTTACTGTGGTTCTCAATCTTAGCCCTGAACAAAAGCTTGACATAGAAAAATTAAAGAAGTCATCTGGAAAGTTCAAGATATCTTCTGTAGGCAGTGCTGTCTATTTGCACCCTAAACTGAAATCTTTAGCTGAAAAATGTGGAGAAAATAATATATCTGATGATATAATCGATGTTCTGGTAGAAAAATCAGATGCCAGAGAAGGTGTGAAGTCCAAATTCTTTTGGAACATGCTAAATCTGTGTGAATCAGCTGGGGAGAAACTTCTGGTATTCAGTCAATACTTGCTCCCTTTGAAATATCTGGAAAGGTTAACCATGCAGAGTAAAGGGTGGAGTCTAGGAAAGGAAATATTCGTAATCTCAGGAGAATCAAGCTCCGAGCAGAGAGAATGGTCCATGGAAAGATTTAACAATTCTCCTGATGCCAAAGTGTTCTTTGGCTCTATCAAGGCTTGTGGAGAGGGCATATCATTGGTGGGGGCATCACGCATAGTCATTTTGGACGTTCATCTTAATCCTTCAGTTACTCGCCAAGCTATTGGTCGTGCATTCAGACCAGGCCAGCAGAAGAAAGTCTTTGTATATCGATTGGTGTCTGCTGATTCTCCAGAAGAGGATGATCATATCACTTGTTTCAAGAAGGAATTAATTTCAAAAATGTGGTTTGAATGGAACGAGTATTGTGGTGATCGAGCATTTGAAGTTCAGGAAGTTCTTCTCAAAGACTCTACCGATCTTTTTCTTGAGAGTCCATTGCTAGGAGAAGATGTAAAAGCTCTGTACAAAAGGTAG 2631 0.3972 MQILGPYFAKYPGLLNQFMNMVTDHDEDTPKFEDQLDTGLTYHDDIDLEGKNTEKDVRAASIPAVIHIDSDVEDDEDEKSVVPFHYASDAEDDRHNKSNVPFHEASEEEEDRHDKSIVPFREASEEDDRHSKSNVPFHEVVFNMLHLGMMIGIKVSYKGSLVIGQLMGLKMKIMDSHCTPTPSRRKSKDRKIESMAGKGTPSGDKGVYIGVKEEEDHQVDAADNEGLEDIWKEMSMAMECSKVVSSNPLPDEEVERDHEEVERDEDCDHSFILKDDIGYVCRVCGIIDRRIETIFEFQYKVKRSTRTYASDSCNTKAKADVFAINVAEDDLMVTEFSAHPRHMKQMKPHQVDGFNFLVRNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQRWQVEDIPLYDFYTVKADSRNQQLEVLKQWVEKKSILFLGYKQFSSIVCDNGTNITSLSCQDILLRVPSILILDEGHNPRNENTDMVQSLAKVHTPRKVVLSGTLYQNHVREVFNILNLVRPKFLKMETSKPIVRRIESRVHIPGVRNFHDLVENTLKGTDFKEKVAVIRDLREMTGNVLHYYKGDFLDELPGLVDFTVVLNLSPEQKLDIEKLKKSSGKFKISSVGSAVYLHPKLKSLAEKCGENNISDDIIDVLVEKSDAREGVKSKFFWNMLNLCESAGEKLLVFSQYLLPLKYLERLTMQSKGWSLGKEIFVISGESSSEQREWSMERFNNSPDAKVFFGSIKACGEGISLVGASRIVILDVHLNPSVTRQAIGRAFRPGQQKKVFVYRLVSADSPEEDDHITCFKKELISKMWFEWNEYCGDRAFEVQEVLLKDSTDLFLESPLLGEDVKALYKR* 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01214 876 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 360 539 IPR014001 -
Lapu11g01214 876 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 61 875 IPR044567 GO:0080188
Lapu11g01214 876 SMART helicmild6 712 800 IPR001650 -
Lapu11g01214 876 SMART ultradead3 342 552 IPR014001 -
Lapu11g01214 876 Pfam Helicase conserved C-terminal domain 694 799 IPR001650 -
Lapu11g01214 876 CDD SF2_C_SNF 672 811 - -
Lapu11g01214 876 Gene3D - 313 561 IPR038718 -
Lapu11g01214 876 Gene3D - 608 864 IPR027417 -
Lapu11g01214 876 MobiDBLite consensus disorder prediction 85 132 - -
Lapu11g01214 876 MobiDBLite consensus disorder prediction 177 206 - -
Lapu11g01214 876 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 685 852 IPR001650 -
Lapu11g01214 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 329 554 IPR027417 -
Lapu11g01214 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 837 IPR027417 -
Lapu11g01214 876 MobiDBLite consensus disorder prediction 179 195 - -
Lapu11g01214 876 Pfam SNF2-related domain 366 570 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01214 Lapu-Chr11 14166191 14170983 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01214 697 818 RAD5 or RAD16-like Gene Family AT5G43530 35.246 7.84e-14 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu11g01214 SNF2_N 1.5e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01214 K10875 - gmx:100795356 1268.83