Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01213 ATGGGAAAGAAGAACAAAGTGAAGGAGAATGGAGGCAAAGAGCATTGCTCCTCCACACTTTTTGTCTCCAACTTGCCCTATTCCTTTTCCAATTCTCAGTTGGAGGAGACGTTCAGTGAGGTTGGACCTGTGAGGCGTTGCTTCATGGTCACACAAAAAGGGTCAGCACAACATCGTGGTTTTGGTTATGTCCAATTTGCTGTTGAGGAAGACGCCAACCGTGCTATTGAGCTGAAGAATGGCATGTCTGTTGAAGGCCGTAAAATTGGGGTGAAGCATGCAATGCCTCGTCCTCCCCGTGAGGAACGGAAGTCAAAACCAAATAAAGTTTGTAATGTAATAGCGGGAACGCCAGATAATCTTGTAAAACCAAAAGATGATGACGTCAAAGACAGCAAACCATCTGGAACTGAGAAGCATGTTTCAGTTTTGAAGGAAGAAGTACAAGTTACAAGTAAAGAGAAAAACTCAAGGAAGCCCAAGGAAACAAAAAAGTCAGCTCTTTGTAATGATGTAGCAGACGAGGGTGGTGGCTCGGAAAAGCAAAGGGTTGCTAGAACTGTGATATTTGGTGGCCTCGTAGATTCTGACATGGCTGAAGAAGTTCACAGCCAAGCCAGAGAGATTGGCACTGTGTGTTCTGTTAACTACCCTCTTTCAAGGAAAGATCTCGAGCAACATGGTCTCATGCAAGATGGCTGTACCATGGATGCTACGTCTGTACTTTATACAAGTGTAAAATCAGCTCGAGCTTCTGTTGCAATGTTGCATAAAAAAGTGATAAGAGGGGAAACAGTTTGGGCCCGCCAACTGGGTGGAGAGGGTTCCAAGACTCAGAAATGGAAGCTTATTGTCAGAAACCTTCCTTTCAAGGCAAAAGATACTGAAATAAGAGATATGTTTTCTTCTGCTGGATATGTGTGGGACGTATTTATTCCACAAAAGTCAGACACAGGTCTCTCTAAGGGCTTTGCATTTGTAAAATTCACCTGCAAGCAAGATGCAGAAAATGCCATTCAAAAGCTGAATGGATCAAAGTTTGCAAAACGAGTCATAGCTGTTGATTGGGCTGTTCCAAAGAAGATATTTAGTAGTGATATGAATGATGCTCGTGCATCAGAGAAAGGACAACAAGACTTGAGTGATGAAGATAGTGATGAGGAAGATGTCGAGCTTGTTGATAAAATATCTGGTCAAGGAGATGATAATGATACAAACTACTCTAGTGCCGTGGAAGAAGAGGGAGCTCCTCCTGAAGACAATTTTGACAAGGAAGCAGACATTGCAAGAAAGGTTCTTAACAACTTGCTTGGATCCTCAAGTAAAGGAACATCTGAAAACAATGATTCTATGTTGTCCAAAGAAAACCAAGAGTCAAGATCTGATGAAGTTGTTAAGGATTCAGATGGAAAAGTATCTGATGACTCTGAAAAGGTTTCAGGTGTTTCTAAGCCTGAAGTTTCCAGCAGAAACAACTCATCAAATTCTAAGGGAACAGAAGAAGAAGATTTGCAGAGAACAGTTTTTATAAGTAATCTTCCCTTTGAATGTGATAACGAAGAAGTAAAACAACGATTTTCTGGGTTTGGGGAAGTAGAATACTTTGCTCCTGTTCTCCACCAAGTTACCAAGCGACCAAGAGGAACTGGTTTTCTAAAGTTTAAAACTGTAGAAGCAGCTAATACTGCAATTTCAACTGCTCTTGCTGCTTCTGGGACAGGTATTTTGCTGAAGGGGAGACCATTGAAAGTTTTAAAGGCTTTGGATAAGAAATCGGCGCATGAAAAAGAACTAGAGAAAGCAAAAAATGAGGTTCATGACCACCGGAATCTTTACTTGGCAAAGGAGGGACTTATTCTTGAGGGAACTACAGCTGCTGAAGGGGTTTCAGCCAATGATATGTTAAAACGCCAAGAGTTGGAGAGGAAAAAGAAGACAAAGCTTCAATCTCCAAATTTTCATGTTTCAAGAACAAGACTCGTTATCTACAACTTACCCAAGTCAATGAATGAGAAAGAACTCAAGAAGCTTTGCATTGATGCAGTCATCTCTAGAGCTACCAAGCAAAAACCTGTAATTCGGCAGATAAAGTTTTTGAAAAATGATAAGAACGGAAAGGTAGCCCAAGAACGCTATTCGCGGGGAGTTGCCTTCATTGAATTTTCTGAGCATCAGCATGCCCTTGTGGCTCTGAGAGTTCTTAACAACAATCCTGAAACATTTGGTCCTGAACATCGACCAATAGTGGAGTTTGCTCTTGATAATGTTCAAACACTTAAACTTCGGAAGGCAAAGCTACAATTTCAGCAGCAGGCTCCTCAAGATGACAATAATGCCATTGGAAATGACAAACCTAGCAACATAGAGGTTCGCATGCAGGACAGAAAAAGAAAGTCTAGAGAGGAGCATGGTGAACCGGCAAAGGAAACAGTACTGAATACAAATGGTGAATCAGGTGGAACACTGGCAAATGGAAAATCCCCTCAAGGAAAAAAATCCAAAAGACAGAAAGGCAACAATAAGAGCAAAAGGGCACTGAAAGAAAATCCAGAAACCCTGTCCATGAAGCCAAACAATAACCAAAATGGCAAGAACACTGGTGGTGCATCAGTTGAAGATCAAAACACTGCCACTGCCACTGCCACTAATAGAAGAAAATCAGGAAACAAAAATGATGATACTGGTTTTAGAAAAAGAAAGATGCAGAATCAAGAACAAAAAGCAGGGCATATGGTGGTTTCTAAGAAACGGTCAAAGAAGAATAAAGATTCAGTAGGGAACGACGCAGTAGACAAGCTTGACATGCTTATAGAACAATATAGATCCAAGTTCTCACACAAGGGTTCCCAAGAGAATGGAGAGAAAAAACCTTCAAAACAGCTTAGGAAATGGTTCCAATCATAG 2904 0.4118 MGKKNKVKENGGKEHCSSTLFVSNLPYSFSNSQLEETFSEVGPVRRCFMVTQKGSAQHRGFGYVQFAVEEDANRAIELKNGMSVEGRKIGVKHAMPRPPREERKSKPNKVCNVIAGTPDNLVKPKDDDVKDSKPSGTEKHVSVLKEEVQVTSKEKNSRKPKETKKSALCNDVADEGGGSEKQRVARTVIFGGLVDSDMAEEVHSQAREIGTVCSVNYPLSRKDLEQHGLMQDGCTMDATSVLYTSVKSARASVAMLHKKVIRGETVWARQLGGEGSKTQKWKLIVRNLPFKAKDTEIRDMFSSAGYVWDVFIPQKSDTGLSKGFAFVKFTCKQDAENAIQKLNGSKFAKRVIAVDWAVPKKIFSSDMNDARASEKGQQDLSDEDSDEEDVELVDKISGQGDDNDTNYSSAVEEEGAPPEDNFDKEADIARKVLNNLLGSSSKGTSENNDSMLSKENQESRSDEVVKDSDGKVSDDSEKVSGVSKPEVSSRNNSSNSKGTEEEDLQRTVFISNLPFECDNEEVKQRFSGFGEVEYFAPVLHQVTKRPRGTGFLKFKTVEAANTAISTALAASGTGILLKGRPLKVLKALDKKSAHEKELEKAKNEVHDHRNLYLAKEGLILEGTTAAEGVSANDMLKRQELERKKKTKLQSPNFHVSRTRLVIYNLPKSMNEKELKKLCIDAVISRATKQKPVIRQIKFLKNDKNGKVAQERYSRGVAFIEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRKAKLQFQQQAPQDDNNAIGNDKPSNIEVRMQDRKRKSREEHGEPAKETVLNTNGESGGTLANGKSPQGKKSKRQKGNNKSKRALKENPETLSMKPNNNQNGKNTGGASVEDQNTATATATNRRKSGNKNDDTGFRKRKMQNQEQKAGHMVVSKKRSKKNKDSVGNDAVDKLDMLIEQYRSKFSHKGSQENGEKKPSKQLRKWFQS* 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01213 967 MobiDBLite consensus disorder prediction 437 452 - -
Lapu11g01213 967 MobiDBLite consensus disorder prediction 368 422 - -
Lapu11g01213 967 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 272 393 - -
Lapu11g01213 967 Coils Coil 584 611 - -
Lapu11g01213 967 MobiDBLite consensus disorder prediction 788 808 - -
Lapu11g01213 967 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 352 IPR000504 GO:0003723
Lapu11g01213 967 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 89 IPR000504 GO:0003723
Lapu11g01213 967 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 508 565 IPR000504 GO:0003723
Lapu11g01213 967 MobiDBLite consensus disorder prediction 121 169 - -
Lapu11g01213 967 CDD RRM1_RBM28_like 19 97 - -
Lapu11g01213 967 SMART rrm1_1 282 355 IPR000504 GO:0003723
Lapu11g01213 967 SMART rrm1_1 507 585 IPR000504 GO:0003723
Lapu11g01213 967 SMART rrm1_1 19 92 IPR000504 GO:0003723
Lapu11g01213 967 SMART rrm1_1 659 750 IPR000504 GO:0003723
Lapu11g01213 967 Gene3D - 657 752 IPR012677 -
Lapu11g01213 967 MobiDBLite consensus disorder prediction 767 967 - -
Lapu11g01213 967 MobiDBLite consensus disorder prediction 116 177 - -
Lapu11g01213 967 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 658 771 IPR000504 GO:0003723
Lapu11g01213 967 MobiDBLite consensus disorder prediction 886 905 - -
Lapu11g01213 967 FunFam RNA-binding motif protein 28 657 752 - -
Lapu11g01213 967 PANTHER RNA-BINDING MOTIF PROTEIN 14B 15 967 - -
Lapu11g01213 967 MobiDBLite consensus disorder prediction 852 885 - -
Lapu11g01213 967 SUPERFAMILY RNA-binding domain, RBD 18 267 IPR035979 GO:0003676
Lapu11g01213 967 SUPERFAMILY RNA-binding domain, RBD 277 363 IPR035979 GO:0003676
Lapu11g01213 967 CDD RRM4_RBM28_like 658 755 - -
Lapu11g01213 967 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 506 589 IPR000504 GO:0003723
Lapu11g01213 967 MobiDBLite consensus disorder prediction 767 784 - -
Lapu11g01213 967 SUPERFAMILY RNA-binding domain, RBD 506 736 IPR035979 GO:0003676
Lapu11g01213 967 CDD RRM3_RBM28_like 506 587 - -
Lapu11g01213 967 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Lapu11g01213 967 Gene3D - 269 392 IPR012677 -
Lapu11g01213 967 Gene3D - 2 109 IPR012677 -
Lapu11g01213 967 Gene3D - 438 603 IPR012677 -
Lapu11g01213 967 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 359 IPR000504 GO:0003723
Lapu11g01213 967 FunFam - 2 133 - -
Lapu11g01213 967 MobiDBLite consensus disorder prediction 437 505 - -
Lapu11g01213 967 FunFam Putative RNA binding ribonucleoprotein 434 603 - -
Lapu11g01213 967 MobiDBLite consensus disorder prediction 811 829 - -
Lapu11g01213 967 MobiDBLite consensus disorder prediction 918 961 - -
Lapu11g01213 967 MobiDBLite consensus disorder prediction 453 481 - -
Lapu11g01213 967 CDD RRM2_RBM28_like 282 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01213 Lapu-Chr11 14154220 14162361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01213 22 98 Eukaryotic Initiation Factors Gene Family AT3G11400 36.364 8.54e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01213 K14573 - gmx:100794821 1505.73