Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01210 ATGCCAGGAAAACCTGACACTGATGATTGGCGTGTAGAGCATGGTGAGCAGATTCAGTTTCTGCCTTGGTGGCGCGCAGTTGGAGAAAATGCCTCCAAATCATCTTCAACTGATCGGTTAAATGGTTCTCCTTCACTGCCTGGAACTGATAAGACAGGTGGAGGTGTTGCTAAAGAGTACCAAAACATCAAACATGACCTGTCTTCAATCCCATTTACCATGGACAAACACCTTGCTCCCAATCCCCACACGGAATTTGCTGGTCACTCAGTTGTTTTAACATCTCCTTATTCAGATGCACAGTATGGTCAAATATTGACTACTTACGGGCAACAATTTATGATAAACCCTCCATTGTATGGAATGCATCAGGCTAGAATGCCTTTGCCACTTGAAATGGAAGAGGAGCCTGTTTATGTCAATGCAAAGCAGTATCATGGTATTTTGCGGCGAAGACAGTCACGTGCTAAGGCCGAGCTTGAAAAGAAAGTAATTAAAAACAGAAAGCCATACCTCCATGAATCCCGTCACCTACACGCCATGAGAAGGGCAAGAGGCAATGGCGGTCGCTTTCTTAACACAAAGAAGCTCCAAATTAACAGTTCTAGTGTCACTTCTGACATAGGCAACAATAGTGGTGCAAACCCCTCAACAAACTCATTTAACACTCTACATATGCTCACCAACAATGAGAATCTAGTCTCATCAAACACGGTTCAGGACATGCACAGAGTTCAGAGTTTCAACAATGGTTACCATAATGGAAATTCTCTTACAGCACTATACCATTCACAAGTGAATGGAAAAAAGGAGGGAGACTTCTTCGGTAAACAGAGAGACCCTGTTGGGGCTTTCAAATAA 861 0.4332 MPGKPDTDDWRVEHGEQIQFLPWWRAVGENASKSSSTDRLNGSPSLPGTDKTGGGVAKEYQNIKHDLSSIPFTMDKHLAPNPHTEFAGHSVVLTSPYSDAQYGQILTTYGQQFMINPPLYGMHQARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKNRKPYLHESRHLHAMRRARGNGGRFLNTKKLQINSSSVTSDIGNNSGANPSTNSFNTLHMLTNNENLVSSNTVQDMHRVQSFNNGYHNGNSLTALYHSQVNGKKEGDFFGKQRDPVGAFK* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01210 286 ProSitePatterns NF-YA/HAP2 subunit signature. 139 159 IPR018362 GO:0003677|GO:0016602
Lapu11g01210 286 Gene3D - 134 195 - -
Lapu11g01210 286 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 38 252 IPR001289 GO:0003700|GO:0006355
Lapu11g01210 286 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 136 191 IPR001289 GO:0003700|GO:0006355
Lapu11g01210 286 MobiDBLite consensus disorder prediction 31 56 - -
Lapu11g01210 286 PRINTS CCAAT-binding transcription factor subunit B signature 168 191 IPR001289 GO:0003700|GO:0006355
Lapu11g01210 286 PRINTS CCAAT-binding transcription factor subunit B signature 137 159 IPR001289 GO:0003700|GO:0006355
Lapu11g01210 286 ProSiteProfiles NF-YA/HAP2 family profile. 134 194 IPR001289 GO:0003700|GO:0006355
Lapu11g01210 286 SMART cbf3 133 194 IPR001289 GO:0003700|GO:0006355
Lapu11g01210 286 MobiDBLite consensus disorder prediction 31 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01210 Lapu-Chr11 14122637 14127721 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01210 80 223 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.740 2.64e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lapu11g01210 CBFB_NFYA 1.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01210 K08064 - gmx:100782085 440.269