Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01207 ATGAAAACGCTAACAGTTAACATTGAAGATTCTTTTTCCAGTTTGCTAGAGCTTGCTTCTAACAATGATATTGAAGGTTTTAAGGTGCTTTTAGAGAAGGATTCTTCTGCGATCAACGAGGTTGGGTTCTGGTATGGGCGACAAAACGGATCGAAGCAAATTGTTCTCGAGCATCGAACCCCTTTGATGGTTGCTGCTACCTACGGTAGCAATGATGTTCTCAAGCTTATTCTGATGTGCCCCGAGACGGACGTGAATTTCGCTTGTGGGGCGAATAAAACCACTGCCCTCCACTGTGCTGCTTCTGGTGGGTCTGCCAATGCTGTTGAAACTGTGAGGCTGCTTTTATCCGCGGGTGCTGATGCGGGCTGCATGGATGCCTATGGGAATCGACCTATAGATGTGATTGTTGTTCCTCCTAAGCTGCAAGAAATGAAAGCCGTACTCGAGGAGCTTTTATCAGACAGTGCTTCGGATGGGTCTACCGGTGAATTCTCTGTTCCGGTGTCTGTTAATTCATCCAGCCCTGGCTCCCCGAATGGATTGCCATACTCTCCGTCAGACTCGCCGCCATCTCCGGTGGGGGCGAAGTTTACTGAAGCATCTATTGGGTCTTTGTCAGAGAAGAAGGAGTATCCCATTGATCCATCTCTGCCTGATATAAAGAACAGCATATACGCCACCGATGAGTTTCGGATGTTTTCTTTCAAGGTGAGGCCTTGTTCCCGGGCCTACTCTCATGATTGGACCGAGTGCCCATTTGTTCACCCCGGAGAGAACGCAAGGAGGAGAGACCCGAGGAAGTTCCATTACAGCTGTGTGCCGTGCCCTGATTTTAGGAAAGGGGCTTGTAGGCGTGGAGACATGTGTGAATATGCTCATGGGGTGTTTGAATGCTGGCTTCACCCGGCTCAGTATCGGACACGGCTTTGCAAAGATGGTACCAGTTGTAATCGAAGGGTGTGCTTTTTTGCTCACACTGCAGAGGAGCTGCGTCCACTGTATGTGTCCACTGGATCTGCTGTCCCTTCGCCACGATCATCGGCCTCGGCTCCTAATGTCATGGACATGGCTGCTGCGATGAGCCTTTTGCCGGGCTCGCCTTCGTCGGTCTCTTCCATGTCACCATCTCACTTTGGGCAACCGATGTCCCCGTCTGCAAATGGCATGTCACTTTCCTCTGGTGCCTGGGCACAGCCAAACGTGCCAGCTCTTCATTTACCTGGAAGCAATCTTCAATCTAGCCGATTGAGGTCTTCCCTTAGTGCACGAGACATTCCACTAGAAGACTTGAATGGAATGCTTGATCTGGAAGGCCACCAACACCCTTTGAATGACTTGAGCTGTTACTTACAGCCTCGCCCCGGTGCCGGTTCTGTGAGTCGATCTGGTCGGTCCAAGACCCTAACTCCTGCAAATCTGGAAGAGCTCTTTTCTGCTGAGATTTCATCGTCTCCCCGGTTTTCAGATCCAGCAGCGGCGTCTGTGTTTTCCCCAACTCACAAATCAGCTGTTCTCAATCAGTTCCAACAGATACAGAGCATGTTATCACCAATTAATACTAATTTGCTTTCTCCTAGGAGTGTTGACCATCCTCTTTTACAGGCCTCCTTTGGTGTCTCTCCTTCTGGAAGGATGTCGCCAAGAAGTGTGGAACCAATCTCACCGATGAGCACACGCATATCAGCGTTTGCTCAGCGTGAGAAACAGCAGCAGCAACAACAACAGCTACAGCTGCGGAGTGTCAGTTCAAGGGACCTTGGTGCCAACAGTCCCGCCTCAATTGTTTGTTCCCCTGTAAACGCTTGGTCCAAGTGGGGATCTCCTAATGGAAAAGTTGATTGGTCTGTAAATGGAGACGAGCTTGGTAGTCAGATGCGAAGATCATCCTCATTCGAGCTTAAGAACAATGGGGAAGAGCCTGATCTGTCCTGGGTCCAGTCTCTAGTGAAGGAATCCCCACCTGAGATGATCAAAGAGAAGTTTGGTTCTCCTCTGCCCACAGCAGCATCAGCGGATGGACCAAATTCTAATTCTCAAATTGAATCCATTGATCATTCCGTTTTAGGAGCCTGGCTTGAGCAAATGCAACTGGATCAGCTTGTAGTCTAG 2112 0.4967 MKTLTVNIEDSFSSLLELASNNDIEGFKVLLEKDSSAINEVGFWYGRQNGSKQIVLEHRTPLMVAATYGSNDVLKLILMCPETDVNFACGANKTTALHCAASGGSANAVETVRLLLSAGADAGCMDAYGNRPIDVIVVPPKLQEMKAVLEELLSDSASDGSTGEFSVPVSVNSSSPGSPNGLPYSPSDSPPSPVGAKFTEASIGSLSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASAPNVMDMAAAMSLLPGSPSSVSSMSPSHFGQPMSPSANGMSLSSGAWAQPNVPALHLPGSNLQSSRLRSSLSARDIPLEDLNGMLDLEGHQHPLNDLSCYLQPRPGAGSVSRSGRSKTLTPANLEELFSAEISSSPRFSDPAAASVFSPTHKSAVLNQFQQIQSMLSPINTNLLSPRSVDHPLLQASFGVSPSGRMSPRSVEPISPMSTRISAFAQREKQQQQQQQLQLRSVSSRDLGANSPASIVCSPVNAWSKWGSPNGKVDWSVNGDELGSQMRRSSSFELKNNGEEPDLSWVQSLVKESPPEMIKEKFGSPLPTAASADGPNSNSQIESIDHSVLGAWLEQMQLDQLVV* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01207 703 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Lapu11g01207 703 MobiDBLite consensus disorder prediction 156 198 - -
Lapu11g01207 703 ProSiteProfiles Ankyrin repeat region circular profile. 92 121 - -
Lapu11g01207 703 PANTHER UNKEMPT FAMILY MEMBER 17 653 IPR045234 -
Lapu11g01207 703 ProSiteProfiles Zinc finger C3H1-type profile. 275 297 IPR000571 GO:0046872
Lapu11g01207 703 SUPERFAMILY Ankyrin repeat 6 140 IPR036770 -
Lapu11g01207 703 Gene3D - 270 333 - -
Lapu11g01207 703 Gene3D - 4 161 IPR036770 -
Lapu11g01207 703 MobiDBLite consensus disorder prediction 156 182 - -
Lapu11g01207 703 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
Lapu11g01207 703 MobiDBLite consensus disorder prediction 565 588 - -
Lapu11g01207 703 MobiDBLite consensus disorder prediction 372 392 - -
Lapu11g01207 703 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
Lapu11g01207 703 SMART ANK_2a 10 40 IPR002110 GO:0005515
Lapu11g01207 703 SMART ANK_2a 92 124 IPR002110 GO:0005515
Lapu11g01207 703 SMART ANK_2a 57 87 IPR002110 GO:0005515
Lapu11g01207 703 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Lapu11g01207 703 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Lapu11g01207 703 Pfam Ankyrin repeats (3 copies) 19 123 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01207 Lapu-Chr11 14077231 14081700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01207 9 700 C2H2 Transcription Factor Family AT5G12850 53.727 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu11g01207 Ank_2 5.5e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01207 - - gmx:100784225 1186.79