Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01204 ATGAGGAAACCTGATCTGATGTCCAACAAGGACAAAATGAACCACATTAAGAGCAAGTTGAGAAAAGGGTTGTGGTCACCTGATGAAGATGAGAAGCTCGTAAGGTACATGCTCACAAATGGACAAGGATGTTGGAGTGACATTGCAAGGAATGCTGGTCTCCAAAGGTGTGGCAAAAGTTGCCGTCTTCGTTGGATTAATTACTTGAGACCTGACCTCAAACGTGGTGCATTCTCACCCCAAGAGCAAGACCTCATCTTTCATTTGCATTCTATTCTTGGTAACAGGTGGTCTCAGATTGCAGCACGTCTCCCTGGTCGCACAGACAATGAAATAAAGAATTTCTGGAACTCTACATTGAAGAAAAGGATGAAAACTAACACTTCTACTGCCTCACTAAACAACAGCACTGATTCATCAGAGTCTAAAGATGTTCTGAGTGGGATCATGCCCTTTAATGAACATGACATCATGAACATGTGCATGGATTCCTCTTCATCCATATCATCCATGCAAGCTATGGTTTTGCCCGACCAATTTGACCCCTTTCCCATGTTGGTAAATAACCAGTGTGATATGACTAATGTTTCAGAAGATTTTCCCAGCATGCCTACTTCATGCATGACACAAATTGGCATGGTAGATGGGCACCAAGGGAATTATGGGACATTGGAGCCAAATAACAAAATGGGGTTAGGAAGAGACTTCTCCCTTCCTTCACTAGAAAGTAGAAGCTTTGAAAGTGACAGTGTTCCAATTGATGTGAAAAGCCATAACAACCACTTCAATTATGGTTCCTTCAACAACACTGATAAGATTCAAGGCTCCAAAGTAGAGGACTTAATTGGGTTTGGAAATCATGGCCAAGGGGAATTTTTCTTGGAGAATTTGATGCAAGACATAACCTCTTTTCCTTTCCTTGATTTTTAA 930 0.4151 MRKPDLMSNKDKMNHIKSKLRKGLWSPDEDEKLVRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEQDLIFHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRMKTNTSTASLNNSTDSSESKDVLSGIMPFNEHDIMNMCMDSSSSISSMQAMVLPDQFDPFPMLVNNQCDMTNVSEDFPSMPTSCMTQIGMVDGHQGNYGTLEPNNKMGLGRDFSLPSLESRSFESDSVPIDVKSHNNHFNYGSFNNTDKIQGSKVEDLIGFGNHGQGEFFLENLMQDITSFPFLDF* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01204 309 CDD SANT 77 120 IPR001005 -
Lapu11g01204 309 Gene3D - 76 146 - -
Lapu11g01204 309 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Lapu11g01204 309 FunFam Transcription factor MYB46 76 145 - -
Lapu11g01204 309 PANTHER MYB DOMAIN PROTEIN 55 16 231 - -
Lapu11g01204 309 FunFam MYB transcription factor 19 75 - -
Lapu11g01204 309 SMART sant 21 71 IPR001005 -
Lapu11g01204 309 SMART sant 74 122 IPR001005 -
Lapu11g01204 309 CDD SANT 25 69 IPR001005 -
Lapu11g01204 309 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Lapu11g01204 309 Pfam Myb-like DNA-binding domain 75 119 IPR001005 -
Lapu11g01204 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Lapu11g01204 309 Gene3D - 19 75 - -
Lapu11g01204 309 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Lapu11g01204 309 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Lapu11g01204 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01204 Lapu-Chr11 14049599 14052093 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01204 1 309 MYB Transcription Factor Family AT3G08500 44.699 1.11e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu11g01204 Myb_DNA-binding 1.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01204 K09422 - gmx:100784755 551.592