Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01200 ATGACAGATCCTAAGACCAATCTGTTCCATGAATGGTTCAACTTCATGCTCCTCCACCCTCACTACTCTCCTTCTTCTTCCTCTTCTCAATCCTACCCTCCTGCCAACTACTCAAACAACAGGTTTGGAATTCAATTACAAGGACCCTCATCTTCATATTCATATTCATATGCAGCTCCTCCTCCTCCTCCTCCTCCCTCCCCTCCTCTCAGAGAGGCACTTCCTCTCATCAACAAGATAAGCCTCACAAGTGAGCAGCTCCAACAAGATGAGCACTCACCAAATGTTGTAGAAGAGAAAGAAGAGGAGAAGGTGGAAAACAACAAGCATGAGAGTGGTGAAGATGGTGATGAAGAAACCGTGACTGTTGCCCTACACATAGGGCTTCCCAGAATGGATACTTCTTCTGATCTGGGGTCATCTAGGGTGGCCTCAACTTGTATGGAAATGGGTGAAAAAGAGGAAGTGAACATAATTTCTGAACACCCTTTGGATAGATTGAACAAGGGTCAGTATTGGATTCCCACCCCTTCTCAGATTCTAATTGGTCCTACACAGTTCCCATGTCCTGTGTGCTCAAAAACTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAGGGGCCTGATTCTCTAAAAGGAACACAACCAACAGCTATGCTAAGGCTTCCATGCTTTTGCTGTGCACCAGGCTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTCAAGGATTTCAGAACTCTTCAAACACATTACAAGAGAAAGCACGGCATAAAACCCTACATGTGCAGAAAGTGTGGCAAAGCATTTGCAGTAAAAGGTGATTGGAGAACACATGAGAAGAACTGTGGCAAAATATGGTATTGTTTGTGTGGGTCTGATTTCAAGCACAAAAGGTCACTAAAAGACCACATCAAGGCCTTTGGCTATGGCCATGGTGCTTTTGGCATTGATTGCTTGCAAGAAGAAGAAGAAGCAGCTTCTGAAATTGAACATGATGGAGAAAATTCAATATGA 1047 0.4413 MTDPKTNLFHEWFNFMLLHPHYSPSSSSSQSYPPANYSNNRFGIQLQGPSSSYSYSYAAPPPPPPPSPPLREALPLINKISLTSEQLQQDEHSPNVVEEKEEEKVENNKHESGEDGDEETVTVALHIGLPRMDTSSDLGSSRVASTCMEMGEKEEVNIISEHPLDRLNKGQYWIPTPSQILIGPTQFPCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCGKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGAFGIDCLQEEEEAASEIEHDGENSI* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01200 348 SUPERFAMILY beta-beta-alpha zinc fingers 255 291 IPR036236 -
Lapu11g01200 348 MobiDBLite consensus disorder prediction 23 55 - -
Lapu11g01200 348 Pfam C2H2-type zinc finger 187 206 - -
Lapu11g01200 348 ProSiteProfiles Zinc finger C2H2 type domain profile. 187 214 IPR013087 -
Lapu11g01200 348 SMART c2h2final6 271 291 IPR013087 -
Lapu11g01200 348 SMART c2h2final6 187 209 IPR013087 -
Lapu11g01200 348 ProSiteProfiles Zinc finger C2H2 type domain profile. 271 291 IPR013087 -
Lapu11g01200 348 MobiDBLite consensus disorder prediction 23 72 - -
Lapu11g01200 348 FunFam Zinc finger protein WIP2 240 322 - -
Lapu11g01200 348 FunFam zinc finger protein WIP2-like 186 209 - -
Lapu11g01200 348 ProSitePatterns Zinc finger C2H2 type domain signature. 189 209 IPR013087 -
Lapu11g01200 348 Gene3D Classic Zinc Finger 186 209 - -
Lapu11g01200 348 Gene3D Classic Zinc Finger 250 321 - -
Lapu11g01200 348 SUPERFAMILY beta-beta-alpha zinc fingers 183 209 IPR036236 -
Lapu11g01200 348 MobiDBLite consensus disorder prediction 92 119 - -
Lapu11g01200 348 MobiDBLite consensus disorder prediction 56 72 - -
Lapu11g01200 348 PANTHER ZINC FINGER PROTEIN WIP2 27 343 IPR043584 GO:0003700|GO:0010468
Lapu11g01200 348 MobiDBLite consensus disorder prediction 85 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01200 Lapu-Chr11 13991946 13994241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01200 1 341 C2H2 Transcription Factor Family AT3G57670 55.200 8.62e-124 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu11g01200 zf-C2H2_6 2.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01200 - - gmx:100794446 581.252