Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lapu11g01200 | ATGACAGATCCTAAGACCAATCTGTTCCATGAATGGTTCAACTTCATGCTCCTCCACCCTCACTACTCTCCTTCTTCTTCCTCTTCTCAATCCTACCCTCCTGCCAACTACTCAAACAACAGGTTTGGAATTCAATTACAAGGACCCTCATCTTCATATTCATATTCATATGCAGCTCCTCCTCCTCCTCCTCCTCCCTCCCCTCCTCTCAGAGAGGCACTTCCTCTCATCAACAAGATAAGCCTCACAAGTGAGCAGCTCCAACAAGATGAGCACTCACCAAATGTTGTAGAAGAGAAAGAAGAGGAGAAGGTGGAAAACAACAAGCATGAGAGTGGTGAAGATGGTGATGAAGAAACCGTGACTGTTGCCCTACACATAGGGCTTCCCAGAATGGATACTTCTTCTGATCTGGGGTCATCTAGGGTGGCCTCAACTTGTATGGAAATGGGTGAAAAAGAGGAAGTGAACATAATTTCTGAACACCCTTTGGATAGATTGAACAAGGGTCAGTATTGGATTCCCACCCCTTCTCAGATTCTAATTGGTCCTACACAGTTCCCATGTCCTGTGTGCTCAAAAACTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAGGGGCCTGATTCTCTAAAAGGAACACAACCAACAGCTATGCTAAGGCTTCCATGCTTTTGCTGTGCACCAGGCTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTCAAGGATTTCAGAACTCTTCAAACACATTACAAGAGAAAGCACGGCATAAAACCCTACATGTGCAGAAAGTGTGGCAAAGCATTTGCAGTAAAAGGTGATTGGAGAACACATGAGAAGAACTGTGGCAAAATATGGTATTGTTTGTGTGGGTCTGATTTCAAGCACAAAAGGTCACTAAAAGACCACATCAAGGCCTTTGGCTATGGCCATGGTGCTTTTGGCATTGATTGCTTGCAAGAAGAAGAAGAAGCAGCTTCTGAAATTGAACATGATGGAGAAAATTCAATATGA | 1047 | 0.4413 | MTDPKTNLFHEWFNFMLLHPHYSPSSSSSQSYPPANYSNNRFGIQLQGPSSSYSYSYAAPPPPPPPSPPLREALPLINKISLTSEQLQQDEHSPNVVEEKEEEKVENNKHESGEDGDEETVTVALHIGLPRMDTSSDLGSSRVASTCMEMGEKEEVNIISEHPLDRLNKGQYWIPTPSQILIGPTQFPCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCGKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGAFGIDCLQEEEEAASEIEHDGENSI* | 349 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lapu11g01200 | 348 | SUPERFAMILY | beta-beta-alpha zinc fingers | 255 | 291 | IPR036236 | - | |
Lapu11g01200 | 348 | MobiDBLite | consensus disorder prediction | 23 | 55 | - | - | |
Lapu11g01200 | 348 | Pfam | C2H2-type zinc finger | 187 | 206 | - | - | |
Lapu11g01200 | 348 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 187 | 214 | IPR013087 | - | |
Lapu11g01200 | 348 | SMART | c2h2final6 | 271 | 291 | IPR013087 | - | |
Lapu11g01200 | 348 | SMART | c2h2final6 | 187 | 209 | IPR013087 | - | |
Lapu11g01200 | 348 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 271 | 291 | IPR013087 | - | |
Lapu11g01200 | 348 | MobiDBLite | consensus disorder prediction | 23 | 72 | - | - | |
Lapu11g01200 | 348 | FunFam | Zinc finger protein WIP2 | 240 | 322 | - | - | |
Lapu11g01200 | 348 | FunFam | zinc finger protein WIP2-like | 186 | 209 | - | - | |
Lapu11g01200 | 348 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 189 | 209 | IPR013087 | - | |
Lapu11g01200 | 348 | Gene3D | Classic Zinc Finger | 186 | 209 | - | - | |
Lapu11g01200 | 348 | Gene3D | Classic Zinc Finger | 250 | 321 | - | - | |
Lapu11g01200 | 348 | SUPERFAMILY | beta-beta-alpha zinc fingers | 183 | 209 | IPR036236 | - | |
Lapu11g01200 | 348 | MobiDBLite | consensus disorder prediction | 92 | 119 | - | - | |
Lapu11g01200 | 348 | MobiDBLite | consensus disorder prediction | 56 | 72 | - | - | |
Lapu11g01200 | 348 | PANTHER | ZINC FINGER PROTEIN WIP2 | 27 | 343 | IPR043584 | GO:0003700|GO:0010468 | |
Lapu11g01200 | 348 | MobiDBLite | consensus disorder prediction | 85 | 119 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lapu11g01200 | Lapu-Chr11 | 13991946 | 13994241 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lapu11g01200 | 1 | 341 | C2H2 Transcription Factor Family | AT3G57670 | 55.200 | 8.62e-124 | 359 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Lapu11g01200 | zf-C2H2_6 | 2.8e-05 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lapu11g01200 | - | - | gmx:100794446 | 581.252 |