Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01195 ATGAGTATTGTGTATAGTCATGCTGTGAAGTATTCCCAAGAGGTGACAAGGATGAACCCAGAGATGGACTCAAATATTGGTCAACATTGTCACCAACAAAATTCTGGGCTAATGAGGTACCGTTCTGCTCCAAGCTCATTGCTCTCAAGCCTTGTGAACGGCAACAGCAACAGCAACATCAACTACAACATTGGTTGTGTCAATGGAGAAGCATTCAAAAGTAAGCATACCAATCATCATCAGCAGCAGCAGCTGCATTATCCTCCCTCCACAAGTTCTGAAATGGAGACCATGTTGGCCAAGTTGATTTCTTCCGATGATTCTGAGCCTTTGCAAGAGTTTGGCGGGAAGCCAGTGAAGGAAGAAGCAGGGGACTCTATTTCACAACCACCACAACACAATGGTTACTCTTACGGGTCTTCACCACAGATAATGTACCAAACTCAGCAAGTTCAAGCCTTTCCTATGCTAAACGGTTCTTCACGGGCTGCAGGGAATGGTTTTGATTGCTCATTCAGTGCAGTGAATTCCATGGTTTCACAGAATTCCACACAAAACAAAATGGGTGCTTCCACCAATTGCTCCAACCTCATTAGGCAAAAGAGTTCCCCTGCAGGGTTTTTCTCCAATTACCCAGTTGATAATTCACTGAGAGATGTGGCGAGTTTTAGGGGCCGTGATGTACCAAATGGACAAGCTATTACATCCACCAGTGGATTGCATGGGACTTTGAACTTCTCATCTAGACCATCCTCTTGCTCCACCAGGATGCCACAGATTGCTGAAAATGGAAATGAAGGAGTGGAGGCAAATTGTGCTGACAGTAGAAACCTGAGGAATGACAATGGCAACACTAAGTGTTACATGCCTAGTTTCACCTCTGACTTCTGGGATGGCAGTGCCCCCTCAACAACTAGTAACAATTGTGAAATATCATTTTCCACTTCAAATGCAATGGATATTCAGGATGCAGATTTTGGATATCAAAAAGTTGGTCTGACCCATCATTTGAGTCTGCCTAGCTCTTCTACTAGAATGGCTACCATGGAGCAGTTATATCAAAGTCAAGGAGCTGTTCCATGTAAAATTCGTGCCAAGAGAGGCTTTGCCACCCACCCAAGAAGCATTGCTGAAAGGGAAAGAAGAACAAGAATTAGTGCAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAATCAGACAAGCAAACAAGCACAGCGGATATGTTGGATTTGGCAGTTGAGTACATTAAAGATCTGCAGAAACAAGTTCAGATGCTCGCTGACACTAGGGCAAAGTGCACTTGTACAAGTAATCAGATTCAATATTCTAGACCTTGTGCCTGA 1344 0.4375 MSIVYSHAVKYSQEVTRMNPEMDSNIGQHCHQQNSGLMRYRSAPSSLLSSLVNGNSNSNINYNIGCVNGEAFKSKHTNHHQQQQLHYPPSTSSEMETMLAKLISSDDSEPLQEFGGKPVKEEAGDSISQPPQHNGYSYGSSPQIMYQTQQVQAFPMLNGSSRAAGNGFDCSFSAVNSMVSQNSTQNKMGASTNCSNLIRQKSSPAGFFSNYPVDNSLRDVASFRGRDVPNGQAITSTSGLHGTLNFSSRPSSCSTRMPQIAENGNEGVEANCADSRNLRNDNGNTKCYMPSFTSDFWDGSAPSTTSNNCEISFSTSNAMDIQDADFGYQKVGLTHHLSLPSSSTRMATMEQLYQSQGAVPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKSDKQTSTADMLDLAVEYIKDLQKQVQMLADTRAKCTCTSNQIQYSRPCA* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01195 447 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 43 435 - -
Lapu11g01195 447 MobiDBLite consensus disorder prediction 106 140 - -
Lapu11g01195 447 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 369 419 IPR011598 GO:0046983
Lapu11g01195 447 SMART finulus 375 425 IPR011598 GO:0046983
Lapu11g01195 447 Pfam Helix-loop-helix DNA-binding domain 375 420 IPR011598 GO:0046983
Lapu11g01195 447 Gene3D - 371 441 IPR036638 GO:0046983
Lapu11g01195 447 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 372 433 IPR036638 GO:0046983
Lapu11g01195 447 FunFam Transcription factor bHLH130 family 370 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01195 Lapu-Chr11 13946355 13950250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01195 28 437 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 31.395 8.76e-45 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu11g01195 HLH 1.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01195 - - gmx:100795896 687.952