Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01190 ATGTCGCGGAAGGGTTTGATGGAACAAGACCTGAGTAAGTTGGATGTGACAAAGTTGCATCCACTTTCTCCTGAAGTCATATCTCGGCAAGCTACTATTAATATTGGCACTATTGGTCATGTGGCACATGGCAAGTCAACAGTTGTGAAAGCAATATCAGGTGTCCAGACTGTGCGTTTCAAAAATGAGTTGGAGCGTAACATTACAATCAAGCTTGGTTATGCAAATGCAAAAATATACAAGTGTGAAGATGAACGGTGTTCAAGGCCTATGTGCTACAAGGCTTATGGAAGTGGGAAAGAAGATAGTCCTATGTGTGATGTGCCAGGGTTTGAAAACAGCAAGATGAAATTGTTGAGACATGTTTCATTTGTGGATTGTCCGGGACATGATATTCTCATGGCTACTATGCTTAATGGAGCAGCAATTATGGACGGAGCTTTACTACTCATAGCTGCTAATGAAAGCTGCCCACAACCACAAACCTCTGAGCACTTGGCTGCTGTGGAAATTATGCGTCTACAGCATATAATAATCCTTCAGAACAAGGTTGACTTGATTCAAGAAAATGTGGCAATCAATCAACATGAGGCAATTTCAAAGTTTATACAGGGAACTGTTGCTGATGGTGCACCAGTAGTACCCATTTCAGCACAGTTAAAGTATAATATTGATGTTGTGTGTGAGTATATTGTGAAGAAGATCCCAATCCCTGAGAGGAACTTTGTTTCTCCACCTAATATGATTGTAATCCGGTCATTTGATGTCAATAAACCTGGTTTTGAGGTTGATGAAATAAAAGGAGGTGTAGCTGGTGGAAGCATTCTGAGAGGTGTGTTGAAGGTGAATCAATTCATTGAAGTTCGACCTGGGATTGTTGTTAAAGATGAGAGTGGAAATATCCGATGCACACCAATATACTCAAGAATAGTTTCATTGTATGCTGAACAAAATGAGCTTCAATTTGCTGTACCTGGAGGCCTGATTGGTGTTGGGACAACAATGGATCCCACATTGACTCGTGCGGATAGGTTGGTAGGTCAAGTTCTAGGAGAGGTTGGATCACTACCTGAGGTTTTTGTCGAACTCGAGGTAAACTTTTTCCTGCTTAGACGACTTCTTGGCGTCCGAACAAAAGGGTCCGAGAGACAGGGGAAGGTATCGAAGCTGGCGAAAGGAGAGATGCTAATGTTGAACATAGGGTCAATGTCAACGGGGGCTAGAGTAATTGCTGTGAAGAATGACTTGGCAAAGTTGCAACTTACATCCCCTGTGTGCACTAGCAAGGGTGAGAAGATAGCACTTAGTCGACGTGTTGAGAAGCATTGGCGTCTTATCGGATGGGGCCAAATCCAAGCAGGAATCACTCTTGACGTCCCTCCTGCTCCCCATCTGAGTTGA 1401 0.4311 MSRKGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDERCSRPMCYKAYGSGKEDSPMCDVPGFENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAISKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFVSPPNMIVIRSFDVNKPGFEVDEIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIRCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKGEMLMLNIGSMSTGARVIAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGITLDVPPAPHLS* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01190 466 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 355 452 IPR009001 -
Lapu11g01190 466 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 30 239 IPR000795 GO:0003924|GO:0005525
Lapu11g01190 466 PRINTS GTP-binding elongation factor signature 177 186 IPR000795 GO:0003924|GO:0005525
Lapu11g01190 466 PRINTS GTP-binding elongation factor signature 123 133 IPR000795 GO:0003924|GO:0005525
Lapu11g01190 466 PRINTS GTP-binding elongation factor signature 34 47 IPR000795 GO:0003924|GO:0005525
Lapu11g01190 466 PRINTS GTP-binding elongation factor signature 139 150 IPR000795 GO:0003924|GO:0005525
Lapu11g01190 466 CDD eIF2_gamma_II 241 354 IPR044127 GO:0000049
Lapu11g01190 466 CDD eIF2_gamma 33 240 IPR044128 GO:0005525
Lapu11g01190 466 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 1 459 - -
Lapu11g01190 466 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 242 IPR027417 -
Lapu11g01190 466 SUPERFAMILY Translation proteins 240 354 IPR009000 -
Lapu11g01190 466 Gene3D Translation factors 357 455 - -
Lapu11g01190 466 FunFam Eukaryotic translation initiation factor 2 subunit gamma 357 456 - -
Lapu11g01190 466 FunFam Eukaryotic translation initiation factor 2 subunit gamma 241 356 - -
Lapu11g01190 466 Pfam Initiation factor eIF2 gamma, C terminal 362 451 IPR015256 -
Lapu11g01190 466 Pfam Elongation factor Tu domain 2 268 350 IPR004161 GO:0005525
Lapu11g01190 466 CDD eIF2_gamma_III 357 451 IPR015256 -
Lapu11g01190 466 Pfam Elongation factor Tu GTP binding domain 32 236 IPR000795 GO:0003924|GO:0005525
Lapu11g01190 466 FunFam Eukaryotic translation initiation factor 2 subunit gamma 30 240 - -
Lapu11g01190 466 Gene3D - 30 240 IPR027417 -
Lapu11g01190 466 Gene3D Translation factors 242 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01190 Lapu-Chr11 13917518 13923130 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01190 1 463 Eukaryotic Initiation Factors Gene Family AT1G04170 90.948 0.0 879
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01190 K03242 - gmx:100805852 915.22