Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01186 ATGGTTCGCTCCCATGGCGTCACTCTCATCAATCGCCTTGCTCGTCGATCTTTTCGTGATGCCAACGATTCTGTTTATCAAGCAGTGTTCCGAAGGGGTTATAGGACATTGAACTCTAGGCCTTGCAATCCATCGAGAGTTATTGGTAGTTTTGCATCCAATGTTGGAGGTGGTGTTAATTTGAAGAAATGGTTGCTATTGGGCGCAGCAAATAAATATTGGGAGGCATCTAGATTAATTCATGGCTCAGCATCATTGGCTAGAGACTATTATGATATTCTTGGTGTGAGTAAGAATGCTAGTTCTTCTGAAATAAAGAAAGCTTACTATGGGCTTGCAAAAAAGCTCCATCCAGATACAAACAAAGATGATCCCGAGGCTGAAAAGAAGTTTCAAGAAGTTTCGATAGCATATGAGGTTTTGAAGGATGAGGAGAGACGACAACAGTATGATCAGCTTGGTCATGATGCTTATGTAAACCAACAAAGCACTGGTTTTGGTGGTGGCGAGGGTGGCTTCAATCCTTTCGAGCAGATATTCCGTGATCATGATTTTGTCAAGAGCTTCTTCCATCAGAATATTGGTGGAGAGGATGTGAAGACTTTTATTGAGCTATCTTTTATGGAAGCTGTACAAGGGTGCACCAAAACTTTAACATTTGAAACAGATATGCTTTGTAATGCTTGTGGTGGGACTGGCGTTCCTCCTGGTACGAGACCTGAAACTTGTAAGCGATGTAAAGGGTCAGGAGTGTTATTTGTACAAGCTGGCATATTCAGAATGGAGAGTACGTGTGGTGCCTGTAAGGGAACTGGGAAAATTGTATCGAATTTCTGCAAGTCTTGCAGGGGTGAGAAGGTTGTCAGAGGAACTAAATCGGTCAAGTTGGATATTATGCCTGGGATAGACACCAATGAGACCATAAAGGTTTTCGGAGGTGGTGGAGCAGATCCTGATAGAGATCATCATGGTGATCTCTATGTTACTATCAAGGTTAGAGAAGACCCTGTTTTTCGCAGAGAAGGATCTGACATTCACGTAGATGCTGTTTTAAGTATCACTCAGGCGATTTTGGGGGGAACTATTCAAGTCCCAACTCTTACTGGAGACGTTGTACTTAAGGTTCGCCCAGGCACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAGGGATCAAGACAAAAAATTCTTACACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAACAAACCTGACAGAGAGACAAAGAGAGTTGATTGAAGAGTTCGCCAAGGAAGAGCAAGAGGAATTTGATAAACGGAGAAGTGCTTCAGCTTCTGGTTGA 1335 0.4247 MVRSHGVTLINRLARRSFRDANDSVYQAVFRRGYRTLNSRPCNPSRVIGSFASNVGGGVNLKKWLLLGAANKYWEASRLIHGSASLARDYYDILGVSKNASSSEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSIAYEVLKDEERRQQYDQLGHDAYVNQQSTGFGGGEGGFNPFEQIFRDHDFVKSFFHQNIGGEDVKTFIELSFMEAVQGCTKTLTFETDMLCNACGGTGVPPGTRPETCKRCKGSGVLFVQAGIFRMESTCGACKGTGKIVSNFCKSCRGEKVVRGTKSVKLDIMPGIDTNETIKVFGGGGADPDRDHHGDLYVTIKVREDPVFRREGSDIHVDAVLSITQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKKKGIKTKNSYTFGDQYVHFNVNIPTNLTERQRELIEEFAKEEQEEFDKRRSASASG* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01186 444 Hamap Chaperone protein DnaJ [dnaJ]. 86 440 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lapu11g01186 444 Pfam DnaJ C terminal domain 202 412 IPR002939 -
Lapu11g01186 444 FunFam Molecular chaperone DnaJ 218 291 - -
Lapu11g01186 444 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 213 289 IPR036410 -
Lapu11g01186 444 CDD DnaJ_C 197 415 - -
Lapu11g01186 444 SUPERFAMILY Chaperone J-domain 88 191 IPR036869 -
Lapu11g01186 444 Gene3D - 199 328 - -
Lapu11g01186 444 ProSiteProfiles dnaJ domain profile. 89 154 IPR001623 -
Lapu11g01186 444 ProSiteProfiles Zinc finger CR-type profile. 213 291 IPR001305 GO:0031072|GO:0051082
Lapu11g01186 444 ProSitePatterns Nt-dnaJ domain signature. 131 150 IPR018253 -
Lapu11g01186 444 Gene3D DnaJ domain 86 198 IPR036869 -
Lapu11g01186 444 CDD DnaJ 89 143 IPR001623 -
Lapu11g01186 444 FunFam Chaperone protein dnaJ GFA2, mitochondrial 86 198 - -
Lapu11g01186 444 FunFam Chaperone protein dnaJ 1, mitochondrial 333 439 - -
Lapu11g01186 444 Gene3D - 226 286 - -
Lapu11g01186 444 Pfam DnaJ central domain 226 286 IPR001305 GO:0031072|GO:0051082
Lapu11g01186 444 CDD DnaJ_zf 226 286 IPR001305 GO:0031072|GO:0051082
Lapu11g01186 444 Pfam DnaJ domain 89 151 IPR001623 -
Lapu11g01186 444 SUPERFAMILY HSP40/DnaJ peptide-binding domain 337 423 IPR008971 GO:0006457|GO:0051082
Lapu11g01186 444 PRINTS DnaJ domain signature 91 109 IPR001623 -
Lapu11g01186 444 PRINTS DnaJ domain signature 109 124 IPR001623 -
Lapu11g01186 444 PRINTS DnaJ domain signature 126 146 IPR001623 -
Lapu11g01186 444 PRINTS DnaJ domain signature 146 165 IPR001623 -
Lapu11g01186 444 Gene3D - 334 441 - -
Lapu11g01186 444 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 50 435 - -
Lapu11g01186 444 SUPERFAMILY HSP40/DnaJ peptide-binding domain 196 340 IPR008971 GO:0006457|GO:0051082
Lapu11g01186 444 SMART dnaj_3 88 146 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01186 Lapu-Chr11 13880073 13887249 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01186 79 151 C2H2 Transcription Factor Family AT1G74250 39.744 7.08e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01186 K03686 - gmx:100799735 814.683