Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01182 ATGTCGCACCGGAAGTTCGAGCACCCGAGGCACGGTTCTCTTGGCTTTCTCCCAAGGAAGCGAGCTTCTCGCCATCGTGGAAAGGGTGACGTGCTGATTTTTTTTGCTGGAGTCTCAGAAACGGCTCTTCTTGCCAAAATCCTGTCAAAGGTTTTGGGATGGAAAACTAACGAGCTCGAGAATTGGCATGCATTTTGCCATAGGCCTTTGGTTTGGAAGCATTTCTTCATCGCTATGGAGATTTGGTTTGGGAGTGCGGTGAAGGCTTTCCCAAAGGACAATCCTAATCAACCATGCAGGTTGACTGCCTTTGTGGGTTACAAGGCTGGAATGACTCACATTGTCAGAGAGGTTGAGAAACCTGGATCAAAACTTCATAAGAAAGAGACGTGTGAAGCTGTTACTATCATTGAAACTCCTCCATTGGTTGTTGTTGGAGTTGTGGGATATGTGAAGACACCTCGTGGTCTTCGTACATTAAATACCGTTTGGGCGCAACATTTAAGTGAAGAAGTCAAGCGACGATTTTACAAGAATTGGTGCAAATCTAAAAAGAAGGCTTTTACCAAATATACAAAAAAGTATGAAACAGAGGAAGGAAAGAAAGATATTGAGTCTCAGCTTGAGAAATTGAAGAAGTATTCAACTGTCATTCGAGTTTTGGCTCATACTCAGATAAGGAAGTTGAGGGGTTTGAAACAGAAGAAAGCACATTTGATGGAGATCCAAGTCAACGGTGGAACAGTAGCACAGAAGGTGGACTACTCATACAGCTTCTTTGAGAAGCAAATCCCAGTGGATGCTGTTTTTCAAAAAGATGAGATGATTGATGTGATTGGTGTAACTAAGGGTAAGGGTTATGAAGGTGTTGTGACTCGTTGGGGTGTTACTCGACTCCCTCGCAAGACTCACAGAGGTCTAAGGAAGGTTGCTTGCATTGGTGCCTGGCACCCTGCTCGTGTTTCTTTCACTGTTGCCAGGGCAGGTCAGAATGGTTATCATCATCGAACTGAATTGAATAAAAAGATCTACAAAGTTGCCAAGACTGGTCAAGAGTCACACACTGCCATCACTGAATTTGACAGGACTGAGAAGGATATTACTCCAATGGGTGGATTCCCTCATTATGGTGTGGTGAAGGATGATTACATAATGGTGAAGGGATGCTGTGTTGGACCCAAGAAGAGGGTTCTCACTCTTCGCCAGTCCCTTCTGAAGCAGACATCTCGTGTGGCTCTTGAAGAGATCAAACTCAAGTTCATTGACACTTCTTCCAAGTTTGGACATGGTCGCTTCCAGACCACTCAAGAGAAACAGAAGTTTTATGGTCGATTGAAGGCATAA 1344 0.442 MSHRKFEHPRHGSLGFLPRKRASRHRGKGDVLIFFAGVSETALLAKILSKVLGWKTNELENWHAFCHRPLVWKHFFIAMEIWFGSAVKAFPKDNPNQPCRLTAFVGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRTLNTVWAQHLSEEVKRRFYKNWCKSKKKAFTKYTKKYETEEGKKDIESQLEKLKKYSTVIRVLAHTQIRKLRGLKQKKAHLMEIQVNGGTVAQKVDYSYSFFEKQIPVDAVFQKDEMIDVIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKVAKTGQESHTAITEFDRTEKDITPMGGFPHYGVVKDDYIMVKGCCVGPKKRVLTLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFYGRLKA* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01182 447 Gene3D Ribosomal protein L3, domain 3 1 43 IPR044892 -
Lapu11g01182 447 SUPERFAMILY Translation proteins 86 428 IPR009000 -
Lapu11g01182 447 FunFam 60S ribosomal protein L3 141 265 - -
Lapu11g01182 447 Pfam Ribosomal protein L3 1 28 IPR000597 GO:0003735|GO:0005840|GO:0006412
Lapu11g01182 447 Pfam Ribosomal protein L3 86 428 IPR000597 GO:0003735|GO:0005840|GO:0006412
Lapu11g01182 447 FunFam Ribosomal protein L3 323 447 - -
Lapu11g01182 447 Gene3D Translation factors 102 443 - -
Lapu11g01182 447 ProSitePatterns Ribosomal protein L3 signature. 270 293 IPR019926 -
Lapu11g01182 447 FunFam 60S ribosomal protein L3 102 199 - -
Lapu11g01182 447 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 442 IPR045077 GO:0003735|GO:0005840|GO:0006412
Lapu11g01182 447 Gene3D - 141 265 - -
Lapu11g01182 447 Gene3D Ribosomal protein L3, domain 3 86 332 IPR044892 -
Lapu11g01182 447 FunFam 60S ribosomal protein L3 284 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01182 Lapu-Chr11 13856010 13860095 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01182 87 444 Cytoplasmic Ribosomal Protein Gene Family AT1G61580 84.358 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01182 K02925 - gmx:100792174 681.019