Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01181 ATGACGACTCGAATTGCGCCTGGTGTGGGAGCCAATTTGCTCGGCCAACATGCCGCTGAGAGGAATCAAGACGCCACTGCTTATGTCGGCAATCTCGACCCTCAGATAAGCGAGGAGTTGTTGTGGGAGTTGTTCGTTCAGGCGGGCCCAGTGGTTAATGTCTATGTCCCGAAGGACAGAGTGACCAACCAACATCAGGGTTATGGGTTTGTTGAATTCCGGAGTGAAGAAGATGCTGACTATGCCATCAAGGTTCTTAACATGATCAAGCTTTATGGGAAACCGATCCGTGTGAATAAGGCATCCCAAGATAAAAAGAGCTTGGATGTTGGTGCAAACCTTTTCATTGGAAATCTTGATCCTGATGTAGACGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCGAAGATCATGAGAGATCCTGAGACAGGAAATTCCCGTGGTTTTGGCTTCATCAGCTATGATTCATTTGAGGCATCTGATTCTGCCATTGAGGCGATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTCTCATATGCTTATAAGAAAGACACTAAGGGTGAACGACACGGTACCCCCGCAGAAAGAGTTTTGGCTGCAAGTAATCCAACTACACAGAAAAGCAGACCTCATACTTTATTTGCCAGTGGACCTCCAACACTTCCCAGTGTTCCTCAGGCCAATGGGGTTGCTCCAGTGCCTCCCCGCCCCTTTGCTAATGGGGTCGCTCCTGGTTCTATACCTGCCCTTCGTCCACCACCCCCTCAAGCTGCTGCATTCCAGCCTATGCCGGTACCTGGGCAACCAACCTGGCATCAGCAACAGCCTGGTCAAACAATCTTACCACCTGCAATGCCACCTCCACCTCAAGTTCAGCAGTTCAGGCCTCCGCACCCTGGTATGCAGCAGATGCCACCACCTCCACAAGCTCCTCCCAGGCCTCTTCCACCACCAGCAGTAATGGGAAGTCAGCCACCACCTGTTTGGCGTCCACCACCACCACCTCAGCATCAAGGTGGACGGCCTATGCCATACCCTCAGTCTATGCCCCCGCCACCACCTCCCCAGTAA 1098 0.5064 MTTRIAPGVGANLLGQHAAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTTQKSRPHTLFASGPPTLPSVPQANGVAPVPPRPFANGVAPGSIPALRPPPPQAAAFQPMPVPGQPTWHQQQPGQTILPPAMPPPPQVQQFRPPHPGMQQMPPPPQAPPRPLPPPAVMGSQPPPVWRPPPPPQHQGGRPMPYPQSMPPPPPPQ* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01181 365 CDD RRM1_SF3B4 28 100 IPR034158 -
Lapu11g01181 365 FunFam Splicing factor 3b subunit 4 16 108 - -
Lapu11g01181 365 Gene3D - 107 205 IPR012677 -
Lapu11g01181 365 CDD RRM2_SF3B4 111 193 IPR034159 -
Lapu11g01181 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Lapu11g01181 365 MobiDBLite consensus disorder prediction 251 271 - -
Lapu11g01181 365 Gene3D - 16 106 IPR012677 -
Lapu11g01181 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Lapu11g01181 365 PANTHER SPLICING FACTOR 3B SUBUNIT 4 14 359 - -
Lapu11g01181 365 MobiDBLite consensus disorder prediction 207 230 - -
Lapu11g01181 365 FunFam splicing factor 3B subunit 4 109 200 - -
Lapu11g01181 365 MobiDBLite consensus disorder prediction 251 365 - -
Lapu11g01181 365 MobiDBLite consensus disorder prediction 289 365 - -
Lapu11g01181 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Lapu11g01181 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Lapu11g01181 365 SUPERFAMILY RNA-binding domain, RBD 25 194 IPR035979 GO:0003676
Lapu11g01181 365 PRINTS Proline rich extensin signature 232 244 - -
Lapu11g01181 365 PRINTS Proline rich extensin signature 257 278 - -
Lapu11g01181 365 PRINTS Proline rich extensin signature 323 348 - -
Lapu11g01181 365 PRINTS Proline rich extensin signature 285 301 - -
Lapu11g01181 365 PRINTS Proline rich extensin signature 304 321 - -
Lapu11g01181 365 PRINTS Proline rich extensin signature 212 228 - -
Lapu11g01181 365 SMART rrm1_1 26 99 IPR000504 GO:0003723
Lapu11g01181 365 SMART rrm1_1 113 187 IPR000504 GO:0003723
Lapu11g01181 365 MobiDBLite consensus disorder prediction 193 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01181 Lapu-Chr11 13848380 13854795 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01181 16 98 Eukaryotic Initiation Factors Gene Family AT4G34110 37.349 1.85e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01181 K12831 - gmx:100791039 608.986