Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01176 ATGGAAGGAGAGTTGGAGAGAGGGTACGTGAAGAAGGGGCCATGGAGTAGAGAGGAAGATGAAGTGCTTCTGAGACATGTCAGAAAGTATGGCCCAAGGGAGTGGAGCTCCATTCGATCCAAAGGCTTGTTGCCACGAACAGGAAAATCTTGTCGTCTTCGATGGGTTAACAAACTTAGACCAAACTTGAAGACAGGATGCAAGTTTACAGCAGAAGAAGAGAGATTGGTGATAGAATTACAGGCTCAGTTTGGGAACAAATGGGCCAAAATTGCAACGTATTTGCCAGGGAGAACGGATAATGATGTGAAAAACTTCTGGAGTAGTAGGAGAAAAAGGTTAGAGAGAATGTTGCAGAAGCCACCAGCGTTAAAGCTGCAAAAAAACAAGGGAAAAACTCCTCTTACTCAAGTGCTAGTGGACAAGGCTCCTTCATGCAGTTCAAATCAGGTGGAGGAAAACCTTTCTTACCCTACTTCCTACATGGTAAACACTGAGGTGTTTGAGATGATCAACCTACCAGATTTGATAAAGCCAAACTATCAACAGTTGGAAAATGATTACTTCAGTGCAGTAGAGGTTGAGGCCACCCCACTTCACACAGTACCATCGTTTGAGTCTTCATCAGGGTACAACTTCCCTCTTCTCCCTGAGCCACTAGTCGAATTTCCAGTATTCCCAGAGTGCCAGGACCTTGTTCCAGACCCCTTTGATCCAATCTTTATTGATGTGTTGGAGGAGAAGAAATGTTCACAATGTGTGTGCAGCCACAACCTTGGGACCGGGTTGCCAACTCTTGGATTGGAGGGAAATTCTCAAATTACAACTTCAAATGGCTTATTTAAGGACTTCCCAAATGAGATATTCGAATACTTTGAGCACATTCCAACCTCAACAGAACAATGA 906 0.4404 MEGELERGYVKKGPWSREEDEVLLRHVRKYGPREWSSIRSKGLLPRTGKSCRLRWVNKLRPNLKTGCKFTAEEERLVIELQAQFGNKWAKIATYLPGRTDNDVKNFWSSRRKRLERMLQKPPALKLQKNKGKTPLTQVLVDKAPSCSSNQVEENLSYPTSYMVNTEVFEMINLPDLIKPNYQQLENDYFSAVEVEATPLHTVPSFESSSGYNFPLLPEPLVEFPVFPECQDLVPDPFDPIFIDVLEEKKCSQCVCSHNLGTGLPTLGLEGNSQITTSNGLFKDFPNEIFEYFEHIPTSTEQ* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01176 301 FunFam MYB transcription factor 12 64 - -
Lapu11g01176 301 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Lapu11g01176 301 SMART sant 11 61 IPR001005 -
Lapu11g01176 301 SMART sant 65 113 IPR001005 -
Lapu11g01176 301 FunFam Transcription factor GAMYB 67 135 - -
Lapu11g01176 301 Pfam Myb-like DNA-binding domain 68 108 IPR001005 -
Lapu11g01176 301 Gene3D - 67 137 - -
Lapu11g01176 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 55 IPR017930 -
Lapu11g01176 301 PANTHER TRANSCRIPTION FACTOR DUO1 6 300 - -
Lapu11g01176 301 Gene3D - 6 65 - -
Lapu11g01176 301 ProSiteProfiles Myb-like domain profile. 68 111 IPR001005 -
Lapu11g01176 301 CDD SANT 14 59 IPR001005 -
Lapu11g01176 301 CDD SANT 68 107 IPR001005 -
Lapu11g01176 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 115 IPR017930 -
Lapu11g01176 301 Pfam Myb-like DNA-binding domain 15 65 - -
Lapu11g01176 301 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01176 Lapu-Chr11 13812533 13814149 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01176 4 297 MYB Transcription Factor Family AT3G60460 42.222 2.90e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu11g01176 Myb_DNA-bind_6 2.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01176 K09422 - gmx:121173231 484.182