Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lapu11g01176 | ATGGAAGGAGAGTTGGAGAGAGGGTACGTGAAGAAGGGGCCATGGAGTAGAGAGGAAGATGAAGTGCTTCTGAGACATGTCAGAAAGTATGGCCCAAGGGAGTGGAGCTCCATTCGATCCAAAGGCTTGTTGCCACGAACAGGAAAATCTTGTCGTCTTCGATGGGTTAACAAACTTAGACCAAACTTGAAGACAGGATGCAAGTTTACAGCAGAAGAAGAGAGATTGGTGATAGAATTACAGGCTCAGTTTGGGAACAAATGGGCCAAAATTGCAACGTATTTGCCAGGGAGAACGGATAATGATGTGAAAAACTTCTGGAGTAGTAGGAGAAAAAGGTTAGAGAGAATGTTGCAGAAGCCACCAGCGTTAAAGCTGCAAAAAAACAAGGGAAAAACTCCTCTTACTCAAGTGCTAGTGGACAAGGCTCCTTCATGCAGTTCAAATCAGGTGGAGGAAAACCTTTCTTACCCTACTTCCTACATGGTAAACACTGAGGTGTTTGAGATGATCAACCTACCAGATTTGATAAAGCCAAACTATCAACAGTTGGAAAATGATTACTTCAGTGCAGTAGAGGTTGAGGCCACCCCACTTCACACAGTACCATCGTTTGAGTCTTCATCAGGGTACAACTTCCCTCTTCTCCCTGAGCCACTAGTCGAATTTCCAGTATTCCCAGAGTGCCAGGACCTTGTTCCAGACCCCTTTGATCCAATCTTTATTGATGTGTTGGAGGAGAAGAAATGTTCACAATGTGTGTGCAGCCACAACCTTGGGACCGGGTTGCCAACTCTTGGATTGGAGGGAAATTCTCAAATTACAACTTCAAATGGCTTATTTAAGGACTTCCCAAATGAGATATTCGAATACTTTGAGCACATTCCAACCTCAACAGAACAATGA | 906 | 0.4404 | MEGELERGYVKKGPWSREEDEVLLRHVRKYGPREWSSIRSKGLLPRTGKSCRLRWVNKLRPNLKTGCKFTAEEERLVIELQAQFGNKWAKIATYLPGRTDNDVKNFWSSRRKRLERMLQKPPALKLQKNKGKTPLTQVLVDKAPSCSSNQVEENLSYPTSYMVNTEVFEMINLPDLIKPNYQQLENDYFSAVEVEATPLHTVPSFESSSGYNFPLLPEPLVEFPVFPECQDLVPDPFDPIFIDVLEEKKCSQCVCSHNLGTGLPTLGLEGNSQITTSNGLFKDFPNEIFEYFEHIPTSTEQ* | 302 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lapu11g01176 | 301 | FunFam | MYB transcription factor | 12 | 64 | - | - | |
Lapu11g01176 | 301 | ProSiteProfiles | Myb-like domain profile. | 7 | 59 | IPR001005 | - | |
Lapu11g01176 | 301 | SMART | sant | 11 | 61 | IPR001005 | - | |
Lapu11g01176 | 301 | SMART | sant | 65 | 113 | IPR001005 | - | |
Lapu11g01176 | 301 | FunFam | Transcription factor GAMYB | 67 | 135 | - | - | |
Lapu11g01176 | 301 | Pfam | Myb-like DNA-binding domain | 68 | 108 | IPR001005 | - | |
Lapu11g01176 | 301 | Gene3D | - | 67 | 137 | - | - | |
Lapu11g01176 | 301 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 10 | 55 | IPR017930 | - | |
Lapu11g01176 | 301 | PANTHER | TRANSCRIPTION FACTOR DUO1 | 6 | 300 | - | - | |
Lapu11g01176 | 301 | Gene3D | - | 6 | 65 | - | - | |
Lapu11g01176 | 301 | ProSiteProfiles | Myb-like domain profile. | 68 | 111 | IPR001005 | - | |
Lapu11g01176 | 301 | CDD | SANT | 14 | 59 | IPR001005 | - | |
Lapu11g01176 | 301 | CDD | SANT | 68 | 107 | IPR001005 | - | |
Lapu11g01176 | 301 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 60 | 115 | IPR017930 | - | |
Lapu11g01176 | 301 | Pfam | Myb-like DNA-binding domain | 15 | 65 | - | - | |
Lapu11g01176 | 301 | SUPERFAMILY | Homeodomain-like | 10 | 107 | IPR009057 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lapu11g01176 | Lapu-Chr11 | 13812533 | 13814149 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lapu11g01176 | 4 | 297 | MYB Transcription Factor Family | AT3G60460 | 42.222 | 2.90e-65 | 205 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB | Lapu11g01176 | Myb_DNA-bind_6 | 2.1e-11 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lapu11g01176 | K09422 | - | gmx:121173231 | 484.182 |