Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01175 ATGTCTGAAGGCTATTCCTGTGCCTGCTCCGACTCCGACTCTTCCTGCGGCTGTTGGTCTACCGCCGCCACTGCCGCTGCCGCCGCCAGATCTGAGGCTTCAACCGAACTCAGACTCTACAGAGCCTTCATCTTCTGTGTCCCCATCTTCTTCACTCTCATTCTCCTCTTTCTCTTCTACCTCTTCTACCTCCGACCGCGAACTAGGCTCCATTGGATCACCCACTTTGGTCTTCCCAACGACGACCACAACCACAATGCCTTCTCCACTCCTGATTTGGGCTTGAACAAAGAGCTCAGAGAGATGCTGCCCGTTATTGTCTACAAGGAAAGCTTCTCTGTCAAAGATACCCAATGCTCAGTGTGCCTCTTGGACTACCAACCAGAGGATAGGTTGCAACAGATTCCTGCATGTGGCCACACATTTCATATGAGCTGCATTGATCTTTGGCTTGCCACCCACACCACCTGCCCTCTCTGCCGCTTCTCCCTACTAACCATAGCTAAGTCTTCAACACAGACATCTGATATGCAGGTAGATTCACAGAACAATGAAGAAACACAAGCCGTGGAATTATCTGAATCAAGATCTACTGTGCATATAGAAACCACTGCCCTCCAAAATGTCTCTGAAGAAGTTGCAATCAGCGCTCACTGCATTGATGTTGAAGGGCAAAATGTGCAAGACAACCAGTAA 696 0.4943 MSEGYSCACSDSDSSCGCWSTAATAAAAARSEASTELRLYRAFIFCVPIFFTLILLFLFYLFYLRPRTRLHWITHFGLPNDDHNHNAFSTPDLGLNKELREMLPVIVYKESFSVKDTQCSVCLLDYQPEDRLQQIPACGHTFHMSCIDLWLATHTTCPLCRFSLLTIAKSSTQTSDMQVDSQNNEETQAVELSESRSTVHIETTALQNVSEEVAISAHCIDVEGQNVQDNQ* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01175 231 CDD RING-H2_EL5-like 118 161 - -
Lapu11g01175 231 Pfam Ring finger domain 118 161 IPR001841 -
Lapu11g01175 231 PANTHER RING-H2 FINGER PROTEIN ATL16 34 207 IPR044600 GO:0016567|GO:0016740
Lapu11g01175 231 SMART ring_2 119 160 IPR001841 -
Lapu11g01175 231 FunFam RING-H2 finger protein ATL7 84 166 - -
Lapu11g01175 231 SUPERFAMILY RING/U-box 103 167 - -
Lapu11g01175 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 166 IPR013083 -
Lapu11g01175 231 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Lapu11g01175 231 MobiDBLite consensus disorder prediction 173 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01175 Lapu-Chr11 13804439 13809302 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01175 27 165 C3H Transcription Factor Family AT4G10150 58.042 1.66e-56 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01175 K19039 - gmx:100794211 330.872