Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01158 ATGCGCAGGGGCAGCATCAGCAGCAGCATCAGCAGCAGCATCAGCAGCAGCGCACATCTATCTTCCTGTATGGTCTCTGCACAAGCATTACCCGGTGAATCGAATCGAAATAAAAATCTGAATTATCGAGTGGCTGCCAATAATCCTTTGGATATCATGGACGACGAGGAATTTGATTGGGAAGCAGCTGCTAGAGAAATCGACGTCGTTTGCCAGATGACGACTGACGCACAGGGAAAGGGAAAGGGAAGTCAGCAAACGACTCTCGATAAGTTCGTGTCTATTGTCAATGCCAAGAAGAAATCCCCAACACCGCAGTTCGAGGAAGATGACCAAAGCCCTACCTTCGTCCACCACATTGACGCGGAGGCAGCCAAAACCTGGATATATCCGGTTAATGTTCCTCTCCGTGACTATCAATTTGATATTACCCAGTCCGCACTCTTCTCAAACACATTGGTGGCCTTGCCAACAGGGCTTGGCAAAACACTCATTGCTGCAGTTGTCATGTATAACTACTTCAGATGGTTTCCTCAAGGCAAAATAGTCTTTGCGGCTCCTTCTCGGCCACTTGTCATGCAGCAGATTGAAGCTTGCCACAATATTGTTGGAATACCTCAAGAATGGACAGTTGATATGACTGGTCAGCTAAGTCCTCCCAAAAGAGCTCAATTTTGGAAAACAAAGCGTGTATTCTTTGTCACTCCTCAAGTGTTGGAAAAGGATATTCATTCTGGTACATGTTTGGTGAAGTACTTGGTATGTTTGGTGATTGATGAAGCTCACAGAGCAATGGGAAATTACGCTTATTGTGAAGCAGTTCGTGAGTTAATGGCTGTACCGGTACAGCTGAGAATATTAGCGTTAACTGCAACACCAGGATCTAAGCAACAGACAGTCCAGGCTGTCGTTGATAATCTGCATATCTCGAGACTTGAATATCGCAGTGAAACAGACCATGATGTTATCTCATATGTTCACAACAGGAAGATAGAATTGATACAGGTTGCGATGGGTCCTGAAGCTGTAGAAATAAACAATAAGTTTATGGAAGTAATACGCCCTATAGTAGCGAGGCTTACAAACATTGGTATCATTCAGAACAGAGATTACCGCACTTTGAGCCCTTGTCAATTACTCGAAATTAGGGAAAATTTTCGTGAACGGCTTAGGCAAGATCTTTCTCATGTCAACTATGAAGACGTTGAAGGATATTTTGGAGTTCTCATCACTCTTTATTACATCCATAAGTTACTTTCGAGCCATGGAATAAGGCCAGCATACGAGATGCTTGAGAGAAAATTGAAGCAAGGATATTTTGCAAAATTTATGAGTAAAAGTGAAGTTATTCTGAAAGCAAGGCAACTAATGCAGCAAAGTTTGTCTCATGGAGCATCGAGTCCAAAATTGTCCAAAATGCTAGATGTATTGCTGGAGCATTTCAAGACCAATGATCCGCAAAACTCCAGGGTAATTATCTTCTCCAATTACAGAGAAAGTGTCAGGGATATAATGAATGCACTTGAAGATATTGGGGAATTAGTTAGAGCTACCGAGTTTATTGGTCAAAGTTCAGGGAAAGCAATGAAAGGTCAGTCCCAAAAGGTTCAACAGGCTGTGCTGACGAAATTTCGGTCTGGCACGTATAATGTCATTGTTGCCACATCAATCGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATTTCACCACTTAGAATGATTCAGCGAATGGGGAGAACTGGAAGGAAGCATGACGGACGAGTTGTTTTTGCTTGTGAAGGAGCTGAGTTGAAGGGCTACTTGCGAAAACAGGCAAAGAGCAAAACTATAAGTAAACACATGCGCAATGGGGGCATAAATAGCTTTTCCTTTCATCCTAGTCCAAGGATGATTCCTCATGTCTTTAAACCAGAAGTTCAATATGTTGAGCTGTCCATTGAGAAATTTGTTCCTCGTCAAAAGAATGTGAAGGATGACGAGCTCCACATTTCTCCATCGAAGGACAAACTCACTGTGGCTGAAATTGATTTACTTGAAACATATTTTCACCCTACTGGGGAAAACAATTGTAGAATGTCTCTTATTGCCTTCCCCCACTTCCAGACCTTTCCTTCTAGAGTGCATAAAGTGAAGCATTCATCTGGAACATTGATGCTTATAGACATGATGCAGCGTTTGCAAGGGCTAGCATCATTTCCAAAAGATGACGAAACTTCTTCATTTCAGGAAGATCTGTGCTTGGGACATAGTAAGCCAGTCACCACTACCAAACTTGATGAAGCTAAAATGGCCAATGAATCATGCTCTAGGCATACAATGAGAATGAGTGTAGCCTCTGTTAATTGTCTGGACCTGGATTCATGTCATTTGGGCATTCAGAGCAACGACTTCGTTGATCTAACTTGGCAAGAAGAAACATGTGAGGGTGATGAGCCAATTCCCGAGACTCCAATTTTTAAGAGAAGTATGTCAAATGAAGGATATGATGCTTGTCAAATGGTAAATATTATGGAGATTGAGACTTCGTCGTTGGTTGCAGATGCATGCATTAATAGCATGAAAGATGAAGAACTTAGTCCACGTCTAACTAATTTGATTAAAAGCGGTGTAGTTCCGGAGTCTCCCATTGATGAAAGAGGGAAATCTGGATACCATTCTGTCATACGCGACTATATTTTACCTGTCAGTGACCACAGAGAACATAATGTTAGTTCTTTAAGTTGTAGGGAAACTAAAATGGTCAACATTGATAGGGACACCGATAAGAATGTCTCTACTTCCTCTGTCAATGAAACTCAAAGCCCTTTACTTGACCGGAAGAATTGTACAATTAGAAGAGGTGGAGTCTTCCTTTCTCAAACTGAAGAAGGCCATACACATAACACTGACGTAAGCCTCAGTGAAGAAGCACTTCCAGCAGATTATGGTGAAATGTCTGAAAACATTAAACCTGCACGCAAATTTAAAAGGTTGCGAAAAGCTGAAGATACTGAAAGCAATAGGAATCAGAAAAACAATGAACTTTTTGCTTCAACAGTGAACTTTCTCAAGTCATCTTCTGCCTCCAATCCCGCACAATATAAGCATGGCCGAGGTAAAAGGAAATCAACATACCATGTGATAGACTTCATCGAGGAGGAAGCTGAGGTATCTTCAGATGCCTATGTATCTAATGATGAAGATGGAGAGGATGACAATTCATTTGACAGTTTCATAGATGACAGGACCAACCCTACAGCAGCCAGTCAGCCTGAAGCTAGTAGAATGGACATGATGGCAATTTACAGGCGTTCTTTGCTCAGTCAAGCACCGAGGAATGGAGAGCTTGATTTTTCTGCCACCTTCACTCCTGACCGTGTGACTATGGCAGCCAGTATAAGTGAAAGTGGGGATTCTTCAGGGAAGACATTGAATCATTTCCATACAGAGCCAGTCAAACAGTCAGCAAATCGGACTTCAGCATCCGTTAGCATCGACCAGATAACCTCAGAAGGTGTGTTTTCAAGCTGTTCTCCTATGGGAAATGGGACTGAGATAAGAAGTCGCAAACGAAGATTGTCGTTTTACCACTGTGAACACTTACCAAATATGAACCTTGAACAAGAATTTGCACTTCAATCAAAGAAAGAAGTGGGGGATGTCGATGCAACTACAGATGTTTTATGTGATGATCACTTTTATAATGAGCTCGATCTCGACGAGTTGGAGGCGAAAGCAACTTTGCTTCTAAAACGGAAATTAGATTTGTCCATTCAGAAGCAAGACACGGCCTCTCAATCTCACTCACCCAACCTTGATATTTTTAGGTCTCCTTCCTTTGACCTTGGGATATGA 3861 0.4196 MRRGSISSSISSSISSSAHLSSCMVSAQALPGESNRNKNLNYRVAANNPLDIMDDEEFDWEAAAREIDVVCQMTTDAQGKGKGSQQTTLDKFVSIVNAKKKSPTPQFEEDDQSPTFVHHIDAEAAKTWIYPVNVPLRDYQFDITQSALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTVDMTGQLSPPKRAQFWKTKRVFFVTPQVLEKDIHSGTCLVKYLVCLVIDEAHRAMGNYAYCEAVRELMAVPVQLRILALTATPGSKQQTVQAVVDNLHISRLEYRSETDHDVISYVHNRKIELIQVAMGPEAVEINNKFMEVIRPIVARLTNIGIIQNRDYRTLSPCQLLEIRENFRERLRQDLSHVNYEDVEGYFGVLITLYYIHKLLSSHGIRPAYEMLERKLKQGYFAKFMSKSEVILKARQLMQQSLSHGASSPKLSKMLDVLLEHFKTNDPQNSRVIIFSNYRESVRDIMNALEDIGELVRATEFIGQSSGKAMKGQSQKVQQAVLTKFRSGTYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVVFACEGAELKGYLRKQAKSKTISKHMRNGGINSFSFHPSPRMIPHVFKPEVQYVELSIEKFVPRQKNVKDDELHISPSKDKLTVAEIDLLETYFHPTGENNCRMSLIAFPHFQTFPSRVHKVKHSSGTLMLIDMMQRLQGLASFPKDDETSSFQEDLCLGHSKPVTTTKLDEAKMANESCSRHTMRMSVASVNCLDLDSCHLGIQSNDFVDLTWQEETCEGDEPIPETPIFKRSMSNEGYDACQMVNIMEIETSSLVADACINSMKDEELSPRLTNLIKSGVVPESPIDERGKSGYHSVIRDYILPVSDHREHNVSSLSCRETKMVNIDRDTDKNVSTSSVNETQSPLLDRKNCTIRRGGVFLSQTEEGHTHNTDVSLSEEALPADYGEMSENIKPARKFKRLRKAEDTESNRNQKNNELFASTVNFLKSSSASNPAQYKHGRGKRKSTYHVIDFIEEEAEVSSDAYVSNDEDGEDDNSFDSFIDDRTNPTAASQPEASRMDMMAIYRRSLLSQAPRNGELDFSATFTPDRVTMAASISESGDSSGKTLNHFHTEPVKQSANRTSASVSIDQITSEGVFSSCSPMGNGTEIRSRKRRLSFYHCEHLPNMNLEQEFALQSKKEVGDVDATTDVLCDDHFYNELDLDELEAKATLLLKRKLDLSIQKQDTASQSHSPNLDIFRSPSFDLGI* 1287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01158 1286 Pfam Type III restriction enzyme, res subunit 149 293 IPR006935 GO:0003677|GO:0005524|GO:0016787
Lapu11g01158 1286 CDD SF2_C_FANCM_Hef 467 598 - -
Lapu11g01158 1286 Gene3D hef helicase domain 340 461 - -
Lapu11g01158 1286 Pfam Helicase conserved C-terminal domain 477 592 IPR001650 -
Lapu11g01158 1286 MobiDBLite consensus disorder prediction 1060 1077 - -
Lapu11g01158 1286 MobiDBLite consensus disorder prediction 1060 1094 - -
Lapu11g01158 1286 FunFam Fanconi anemia, complementation group M 131 326 - -
Lapu11g01158 1286 CDD FANCM_ID 343 457 IPR039686 GO:0006281|GO:0043138
Lapu11g01158 1286 Gene3D - 132 326 IPR027417 -
Lapu11g01158 1286 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 51 1270 - -
Lapu11g01158 1286 SMART ultradead3 132 332 IPR014001 -
Lapu11g01158 1286 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 143 311 IPR014001 -
Lapu11g01158 1286 Gene3D - 462 626 IPR027417 -
Lapu11g01158 1286 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 469 632 IPR001650 -
Lapu11g01158 1286 FunFam ATP-dependent RNA helicase, putative 457 626 - -
Lapu11g01158 1286 SMART helicmild6 502 593 IPR001650 -
Lapu11g01158 1286 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 602 IPR027417 -
Lapu11g01158 1286 CDD DEXDc_FANCM 134 315 IPR044749 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01158 Lapu-Chr11 13550521 13563380 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01158 424 591 Eukaryotic Initiation Factors Gene Family AT3G13920 25.275 3.68e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01158 K10896 - gmx:100820078 1857.03