Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01149 ATGAACTCACCGGAAAGACCCGTCACGACTCCTTGTGGGCACAGTTTCTGTCTGAAGTGCTTTGAGAAATGGTTGCGGCAAGGGAAGAAGAACTGTGTCCGCTGCCGCCAGATTATTCCGCCAAAGATGATAAGTCAGCCCCGGATCAATTCTGCTTTGGTGTTTGCAATTCGCTTGGCGAGGGCGAGGGCTACCTCTAAGAGTAATGGTAGTGGCCTAGGAGAGAGGACTGCCAACCATTTCCTGCACAATCAAGACAGACCCGATGAGCCGTTTACTACGGAACGTGCACAGAGGAGTGGCCGTGCTAATGCGGCCAGCGGAAAAATATTTGTGACCGTGCCTACTGATCATTTTGGTCCAATCACGGCAGAGTATGACCCTACGAGGAACCAGGGTCTGCTGGTGGGTGAAAGTTGGAGAGACAGACTGGAATGCAGGCAATGGGGTGCTCACTTCGTCCCTGTGGGTGGCATTGCTGGCCAATCAGATCGAGGTGCACAATCTGTTGTCCTTTCTGGTGGTTACGTGGATGACGAGGATCATGGAGAGTGGTTTCTCTACACTGGAAGCGGCGGTAAGGATCTCAGTGGCAACAAACGCACCAACAAGAGTCACTCTTTTGACCAGCAGTTTGAGAAGTACAACCGTGCACTTCAAATTAGCTGTCTCCAGGGTTATCCGGTTCGAGTTGTCAGATCTCACAAAGAAAAGCGATCTTCATATGCCCCCGAGACTGGCGTGCGCTATGATGGAATTTATAGAATTGAAAAGTGCTGGCAGACAGCAGGATTGCAGGGTTTCAAAGTTTGCCGGTATCTGTTCATTAGGTGTGACAATGAACCCGCCCCCTGGACAAGTGATGATCATGGAGATAGGCCCAGACCCTTGCCGGTTATTCGCGAACTGAAAAAGGCCACTGTCATATTTGAAAGGACTGAAACTCCGTCTTGGGATTTTGATGAAGAAGATTCTCTTTGGAAGTGGAAGAAACCACCACCTCCCAGCAGACGAAAGGTACAAAACGAGGAACCCGTAGAGGCAGCAAGGGAAAGGTCAGATATGGAAATAAGGAAGTTCCAACTTAAGACAATCAAGGAACAATTGCAAAGAGGGTTCTCGTGCATGATATGCAAGAAGGTTATGGTTTCACCAGTAACAACACCCTGTGCTCATAACTTCTGCAAGTCCTGTTTGGAAGGTGAATTTGCTGGTCAGGCTTTTGTGAAGGATAGAAGTAGGGGCGGGAGAACTCTCCGGTCCAAAAAAAATGTGATGAAATGTCCTTCTTGCACTATTGACATTTCTGATTATCTTCATAATATTCAGGTTGATATAGATTTGAAGAGTGCGATTGAGTCGCTGAAAGCCAAGGTTGAAGAAATTGAAGAATCACTGGAGTCAAGTGAAGATGCAGAAGATGGATTACATGACAATACTGATTCAGGGAACCAAAATTCTGTAGAGGAGTCGAACGATCTACCTGAAGGATCTGATGTTGGTGAGCTTAAAGACACCAATAATGAGGGACCAGATCTAGTAGTAACGTGCATTAGAAAGAGAAAGAAAGACGATGATGAAACACAGTCGCCTGATGATGAAACACAGTTGCCTGATGATGAAATGGAAAAAAGAGATGAAGAAAACGGAAAGACTGAACAAGAAGTGGATGATAAAAATGATTCCTCATCAAGTCCTTTCAATCTTCCATGA 1713 0.4635 MNSPERPVTTPCGHSFCLKCFEKWLRQGKKNCVRCRQIIPPKMISQPRINSALVFAIRLARARATSKSNGSGLGERTANHFLHNQDRPDEPFTTERAQRSGRANAASGKIFVTVPTDHFGPITAEYDPTRNQGLLVGESWRDRLECRQWGAHFVPVGGIAGQSDRGAQSVVLSGGYVDDEDHGEWFLYTGSGGKDLSGNKRTNKSHSFDQQFEKYNRALQISCLQGYPVRVVRSHKEKRSSYAPETGVRYDGIYRIEKCWQTAGLQGFKVCRYLFIRCDNEPAPWTSDDHGDRPRPLPVIRELKKATVIFERTETPSWDFDEEDSLWKWKKPPPPSRRKVQNEEPVEAARERSDMEIRKFQLKTIKEQLQRGFSCMICKKVMVSPVTTPCAHNFCKSCLEGEFAGQAFVKDRSRGGRTLRSKKNVMKCPSCTIDISDYLHNIQVDIDLKSAIESLKAKVEEIEESLESSEDAEDGLHDNTDSGNQNSVEESNDLPEGSDVGELKDTNNEGPDLVVTCIRKRKKDDDETQSPDDETQLPDDEMEKRDEENGKTEQEVDDKNDSSSSPFNLP* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01149 570 ProSiteProfiles Zinc finger RING-type profile. 375 432 IPR001841 -
Lapu11g01149 570 MobiDBLite consensus disorder prediction 331 350 - -
Lapu11g01149 570 Gene3D - 100 298 IPR036987 -
Lapu11g01149 570 SMART G9a_1 124 281 IPR003105 -
Lapu11g01149 570 SMART ring_2 1 35 IPR001841 -
Lapu11g01149 570 SMART ring_2 375 431 IPR001841 -
Lapu11g01149 570 MobiDBLite consensus disorder prediction 515 529 - -
Lapu11g01149 570 ProSiteProfiles Zinc finger RING-type profile. 1 36 IPR001841 -
Lapu11g01149 570 SUPERFAMILY RING/U-box 367 456 - -
Lapu11g01149 570 MobiDBLite consensus disorder prediction 542 560 - -
Lapu11g01149 570 Pfam Zinc finger, C3HC4 type (RING finger) 4 35 IPR018957 GO:0046872
Lapu11g01149 570 Pfam RING-type zinc-finger 375 429 IPR027370 -
Lapu11g01149 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 354 478 IPR013083 -
Lapu11g01149 570 SUPERFAMILY RING/U-box 4 45 - -
Lapu11g01149 570 MobiDBLite consensus disorder prediction 479 493 - -
Lapu11g01149 570 SUPERFAMILY PUA domain-like 103 301 IPR015947 -
Lapu11g01149 570 ProSiteProfiles YDG domain profile. 129 277 IPR003105 -
Lapu11g01149 570 MobiDBLite consensus disorder prediction 463 570 - -
Lapu11g01149 570 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 100 295 - -
Lapu11g01149 570 MobiDBLite consensus disorder prediction 66 104 - -
Lapu11g01149 570 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 2 486 IPR045134 -
Lapu11g01149 570 ProSitePatterns Zinc finger RING-type signature. 390 399 IPR017907 -
Lapu11g01149 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Lapu11g01149 570 Coils Coil 452 472 - -
Lapu11g01149 570 MobiDBLite consensus disorder prediction 80 96 - -
Lapu11g01149 570 Pfam SAD/SRA domain 131 280 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01149 Lapu-Chr11 13476604 13480357 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01149 4 466 C2H2 Transcription Factor Family AT5G39550 60.860 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01149 K10638 - gmx:100801535 954.125