Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01145 ATGCAACCCAAATCTGGCGGCAGACTGCCCAGCTTCCGCTCCACTCCGGCCTCCTGGTTAGAATCAGTTCTTCTGAAAGAGGAGGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAAGAAGAGGAAGCAGCAGCTGAAGAAGAGCCCTTGACCTTTACTCAGTTGCTTTCTACCATCGCACCTCCCTCTCCTTCCCAACGCCAACACTATGAAATACATGATTACACCCCCACCCCCATGTCCTTGCCCATCCCCAATCCAATCTCACACAAGGAACTTGATGCTACTCCCCCCCACATCAAAATGGATAACATGTTCATGTTAGACGACTCGGTACCCTGTAGAGTTCGGGCAAAGCGTGGCTGTGCTACGCATCCCAGGAGTATTGCCGAAAGGGTCCGCAGGACTCGCATCAGTGACCGCATCAGAAAGCTTCAGGAACTCGTGCCAAACATGGATAAGCAAACAAACACTGCGGATATGTTAGATGAGGCGGTAGCTTATGTCAAGTTTCTACAAAAGCAAATTGAGGAACTGACAGAGCACCAACGGAAGTGTAAATGTATGGTTCAAGAGTAA 597 0.4874 MQPKSGGRLPSFRSTPASWLESVLLKEEEEEEEEEEEEEEEEEEEEEEAAAEEEPLTFTQLLSTIAPPSPSQRQHYEIHDYTPTPMSLPIPNPISHKELDATPPHIKMDNMFMLDDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVAYVKFLQKQIEELTEHQRKCKCMVQE* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01145 198 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 196 IPR036638 GO:0046983
Lapu11g01145 198 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 128 178 IPR011598 GO:0046983
Lapu11g01145 198 Coils Coil 168 198 - -
Lapu11g01145 198 CDD bHLH_AtbHLH_like 133 185 IPR045239 -
Lapu11g01145 198 FunFam Transcription factor bHLH130 family 129 197 - -
Lapu11g01145 198 SMART finulus 134 184 IPR011598 GO:0046983
Lapu11g01145 198 Coils Coil 20 54 - -
Lapu11g01145 198 Gene3D - 129 198 IPR036638 GO:0046983
Lapu11g01145 198 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 63 192 - -
Lapu11g01145 198 Pfam Helix-loop-helix DNA-binding domain 133 179 IPR011598 GO:0046983
Lapu11g01145 198 MobiDBLite consensus disorder prediction 1 56 - -
Lapu11g01145 198 MobiDBLite consensus disorder prediction 25 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01145 Lapu-Chr11 13448578 13451776 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01145 106 198 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 76.344 2.62e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu11g01145 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01145 - - vum:124835640 273.092