Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01136 ATGGCCCAGCAGTCATCTAGGCTCCAGCGTTTGCTTACTCTCCTGGACACTGGGTCAACCCAAGCTACAAGGTTGACCGCTGCTCGTCAGATAGGTGACATTGCAAAATCACACCCTCAAGACTTGACCAGTCTTCTCAAGAAGGTTTCTCAATATCTCCGCAGTAAAAATTGGGATACACGAGTTGCAGCTGCTCATGCAATTGGATCAATTGCTGAGAATGTTAAGCACATAAGTTTGACTGAACTTTTTGCTTCTATTGTATCAAAAATGAATGAGAATGGGATATCTTGTAGCATTGAGGATCTGTGTGCATGGCCGTATTTACAATCAAAAATTACTGGAAGCTCATTTAGAAGCTTTGATATGAACAAGGTGCTTGAATTTGGGGCCTTATTAGCATCAGGGGGTCAGGAATATGATATTGGAAACGATAATATAAAGAACCCAAAGGAGCGATTGGTTCGACAAAAGCAAAATCTTCGACGTCGTTTAGGTTTGGATGTCTGTGAACAATTTATGGATATCAGTGATGTAATAAGAGATGAAGATCTTATGGCATCCAAATCAGACTCACATCTGAACGGGATTGATCGTAGAGTTTTTACTTCTTGTTCTGCACATAACATCCAGAAAATGGTTGCAAACATGGTTCCTAGTGTGAAATCAAAGTGGCCCAGCGCAAGAGAATTGAATCTTTTAAAGCGTAAAGCAAAAATAAACTCAAAGGACCAAACAAAAAGCTGGTGTGAAGATGGTGGTACAGAGCCATCAGGTGCTCAAAGTTTGACTTCAAAAGGCACAGGTCCTGATTCACTGAATTACAGTAAGGTATTCATGGATGTTAATCATGATGACGATGGCATTGAGCATGATGGGGATGGGCAATGGCCTTTCCATACTTTTGTTGAGCAACTTATTATAGATATGTTTGATCCTGTTTGGGAGGTACGACATGGTAGTGTGATGGCACTGAGAGAGATTTTAGCACATCAAGGTGCTTCTGCTGGAGTATTTAAACCTGACTCACACATGGGTGGTACCTTGTTTATTGAATTAGAAGACAAAAGTATACCAAGCACAGTGAAGAGAGAGAGGGAAATTGATTTAAATATGCAAGTTTCAGCTGATGAGTTTGATTCAAACTTTAAGAGGCCAAAACTTGAAGATGTGTCATCATCAACCTTTGTGGATAGCGTGATGACTTGCAACAATGAAGGTGATATTAAAATCAGTATTACTTCTGAAACCCATGAATGCGATTTAACTTTGGATTACGGGAATGGGCAATTTAATGGTAATTCTGATGACATGGATCTGGAGTCTCACTCTGATGGCTCTCGTGATGCATGCAAAGAGTCTGCTAGCATAGCAGAACAGAAGGGTCATTTTGATGACAATAAGATTCCCTCTGGAAATCTTATTACACTGAGAAATCTTCCTCAGAACTGTGAGCTGATGAACTCTGTTAAAGTGGCTAGAAGTTCTTGGCTTCAAAACTGTGAATTTCTTCAAGATTGTGTGATACGCTTTTTGTGCGTGTTGTCACTTGATCGCTTTGGAGATTATGTATCTGATCAGGTTGTTGCTCCAGTGCGTGAAACCTGTGCACAGGCTTTAGGTGCTGCATTTAAGTATATGCATCCCACACTAGTAAATGAAACACTGAACATATTGTTGAGAATGCAGTGTAGGCCAGAATGGGAGATTCGTCATGGCAGTCTTCTTGGTATAAAATATTTGGTTGCTGTACGGCAGGAGTTGCTTTCCGATTTGCTTGGACGAGTTCTTCCTGCATGTAAATCTGGGTTGGAGGACCCAGATGATGATGTCCGGGCAGTTGCTGCTGATGCTTTAATACCAGCTGCATCTGCAATTGTTTCCTTGCAGGGTCAAACATTGCATTCAATTGTGATGCTTTTATGGGATATATTGCTTGATTTGGATGATTTAAGTCCGTCCACGAGCAGTGTAATGAATCTGCTGGCAGAAATCTATTCTCAAGAAGATATGGCACCAAATATGTATGAAGTTTTTAGATTGGGAGACAAGGAAATGGAAAACGGAGGAGGTGGTTGTGGTGATGGCGATGGAGAAGAAAATCCTTATGTGCTTTCAACATTGGCACAGCGATTGTGGCCCTTTATGAGGCATAGTATCACATCTGTTCGTTATTCTGCAATACGAACTTTGGAGAGGCTACTTGAAGCTGGATATAAAAGAAGCATGTCTGAGTTGTCTGGTGCTTCATTTTGGCCCTCTTCTATATTTGGAGATACACTTAGAATCGTCTTCCAGAATCTGCTATTGGAAACAAATGAGGATATTTTGCAATGTTCTGAGAGAGTTTGGAGTCTCCTTATTCAGTGTTCTATGGAGGACTTGGAGATGGCTGCGAGTTCTTATGTGGCTTCTTGGATAGAACTTGCATCTACACCATTTGGATCAGCATTAGATGCCTCAAAGATGTACTGGCCTGTTGCCTTTCCACGGAAAAGTCAAATTAGAGCAGCTGCTAAAATGAGAGCTGCAAAAATTGAAAATGAATGCGGTGTGGAATTTAGTCTTGATTCTATTAAAGGAACTACTGCACAAGATAGAAATGGAGATGTTCCTATGAATTCTGTTAAGATAGTCGTTGGTGCTGATGTGGACACGTCTGTAACTCATACCCGAGTAGTTACGGCAACTGCTTTGGGATATTTTGCTTCTAAGCTGCCAGTGGGTTCTTTAAAATATGTGATTGATCCACTGTGGAGCTCTCTAACCTCGTTCTCTGGTGTCCAACGACAGGTTGCATCTATGGTACTTATTTCTTGGTTCAAGGAGATTAAGGTCAAGAATTCGTCCAAAAACCTTGATGGTATCCCCGGTGCTCTGAAAGATTGGTTGCTGGACTTATTAGCATGTTCTGACCCAGCATTCCCGACAAAAGATTCACTTCTTCCTTATGCTGAGCTTTCCAGAACTTATGCAAAGATGCGGAGTGAGGCTGGTCAATTACTAAATGTAGTAAAATCTTCTGGTATGTTTGATGAGTTATTGACAGCAACTCAAATTGAGTTGGATCGCTTGAGTGTGGATGACGCCATTGGTTTTGCTTCAAAAATTCCAGCGTTGTGTAATGATAGTTCTGCAAATGAATCCTTGGCAAAGAACATCATGGATGATATAGAATCCTTCAAACAGAGACTCTTGACAACTTCTGGATATTTAAAATGTGTTCAGAGCAACTTGCATGTTACAGTCACATCTGCAGTTGCAGCTGCAGTTGTCTGGATGTCTGAATTTCCTACACGACTTACACCAATCATTTTGCCTTTGATGGCTTCCATCAGGCGAGAGCAGGAGGAAATACTACAAATGAAGTCTGCTGAGGCCCTTGCTGAGCTAATGTATCACTGTGTCGCACGGAGACCTTGCCCCAATGATAAATTAATCAAGAATATATGTAGTTTAACTTGCATGGATCCCTCTGAGACCCCTCAAGCAAAATCTCTTTGTACCATTGAGAGTATCGATGACCAAGGTCTGCTGTCTTTTAGAACTCCTGTGGGCAAACAGAAGTCAAAGGTCCATGTGCTGGCTGGTGAAGATCGTTCAAAGGTGGAGGGATTTTTAAGTAGACGTGGATCTGAGCTATCATTGAAGCTTCTATGTGAAAAGTTTGGTGCGTCATTATTTGATAAGCTTCCGAAGCTGTGGGATTGCCTTACTGAAGTTCTTAAACCTCTACCCGTCACTGAGGAAAAGCAAGTTACTGCATCTATTGAGTCTGTCAGTGATCCTCAGACCTTGATTAACAATGTCCAGGTGGTGCGCTCTGTTGCTCCCGTGTTAAATGAGGAGTTGAAACCAAAACTGTTGACGCTTCTTCCATGCATCTTCAAATGTGTTCAGCATTCTCATGTTGCTGTTAGATTAGCTGCTTCACGCTGCATCACATCTCTGGCACAGTCAATGACTGTGAAAGTCATGGGAGCTGTGGTTGAAAATGCTATCCCTATGTTAGAAGATTCATCATCTGTTTATGCTCGACAAGGAGCAGGCATGTTGATTAGTTTTCTTGTTCAGGGGCTGGGTGTAGAGTTGGTCCCTTATGCTCCTCTATTGGTAGTTCCACTTCTAAGGTGTATGAGTGATTGTGATCAGTCTGTCAGACAGAGTGTGACCCATAGTTTTGCTGCTCTTGTTCCTTTACTTCCTTTGGCACGAGGCCTTCCTCAGCCGATTGGACTAGGGGAAGGTGTATCCAGAAATGCAGAAGATTTGCAGTTTTTAGAGCAACTGCTTGACAACTCTCATATTGAAGATTACAAATTATGCACTGAATTGAAAGTAACATTGAGGAGGTATCAGCAAGAAGGCATTAATTGGTTAGCTTTTTTGAAACGTTTCAAGCTTCATGGAATTTTATGTGATGACATGGGACTTGGAAAGACAGTTCAAGCATCAGCAATTGTAGCCTCTGACATAGCTGAGCATCGGACTACAATTGGGAATGAGGATCTTCTGGCATCTTTAATTATCTGTCCATCAACTCTAGTTGGGCACTGGGCCTTTGAGATTGAGAAATATATTGATGCTTCTGTTATATCTAGTCTTCAATATGTTGGTTCTGCTCAGGAACGAATGCTTCTTCGAGATCATTTTTGTAAGCATAATGTCATTATAACATCATATGATGTTGTGCGTAAAGATGTTGATTTTCTGGCACAGCTGCTGTGGAATTACTGCATTTTAGATGAAGGGCATATAATAAAAAATGCGAAGTCTAAAGTTACAATTGCTGTAAAACAGTTGAAAGCCCAGCACCGCTTGATATTGAGTGGGACACCTATACAGAATAATATAATGGACTTGTGGTCCCTTTTTGATTTTCTGATGCCTGGATTTCTAGGAACTGAGAGACAGTTCCAAGCAGGATATGGAAAACCACTTTTAGCGGCAAGAGATCCAAAATGTTCTGCTAAGGATGCTGAAGCAGGAGTACTTGCTATGGAGGCATTGCATAAGCAGGTAATGCCTTTCCTCCTTCGTAGAACAAAGGATGAAGTCTTGTCTGATCTGCCAGAGAAAATAATTCAAGACAGATACTGTGATTTGAGCCCTGTACAGTATAAACTTTATGAACAGTTTTCTGGTTCTCGTGTAAAACAAGAAATGTCATCTATTGTAACAACGAATGAGTCTGCAGCACCAGAAGGAAGTGGCAGTTCTACTAAAGCGTCTTCACATGTTTTCCAGGCACTCCAATATTTGCTAAAACTCTGCAGTCATCCATTGCTTGTCATTGGTGAGAAGATTCCAGATTCACTTTTTACCATCCTCTTAGAACTGTTTCCTGCTGGCTCTGATATTGTTTCAGAACTTCACAAACTCCATCACTCCCCAAAATTAGTTGCTCTTCATGAGATTCTAGAAGAATGTGGAATTGGAGTTGATAATTCAGGTTCGGAGGGTGCAGTTAACGTTGGGCAGCATAGGGTCTTGATATTCGCTCAACATAAGGCTTTCCTGGATATAATTGAAAGAGATTTGTTTCAGACACACATGAAAAGTGTCACATATTTGCGGTTGGATGGATCAGTTGCCCCAGAAAAGCGTTTTGAAATTGTCAAAGCTTTCAATTCAGATCCTACCATTGATGTCTTACTGCTAACAACACATGTTGGTGGGCTTGGTTTGAACCTGACATCTGCAGATACCCTTGTCTTTGTGGAGCATGATTGGAATCCAATGCGAGACCATCAGGCTATGGATAGAGCACACAGGTTAGGTCAGAAAAAAGTAGTTAATGTCCATCGGCTAATAATGCGTGGTACTTTGGAAGAGAAAGTTATGAGTCTACAAAGATTCAAAGTGTCCGTGGCTAATGCTGTCATTAATGCTGAAAATGCTAGTATGAATACAATGAATACAGATCAGTTGCTTGATTTATTTGCATCAGCAGAAACTTCCAAAAAGGGTGCTACTGCTGTGAAGAGTTCAGAGAACAACAATGATGTAGACGCTAAATTAGTAGGCAGTGGGAAGAGATTGAAATCAATACTTGGCGGATTGGAGGAGCTATGGGACGAATCACAATATACAGAGGAGTACAATCTGAGTCAATTTTTAGCGAGGCTTAATGGCTAA 6138 0.4115 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGDIAKSHPQDLTSLLKKVSQYLRSKNWDTRVAAAHAIGSIAENVKHISLTELFASIVSKMNENGISCSIEDLCAWPYLQSKITGSSFRSFDMNKVLEFGALLASGGQEYDIGNDNIKNPKERLVRQKQNLRRRLGLDVCEQFMDISDVIRDEDLMASKSDSHLNGIDRRVFTSCSAHNIQKMVANMVPSVKSKWPSARELNLLKRKAKINSKDQTKSWCEDGGTEPSGAQSLTSKGTGPDSLNYSKVFMDVNHDDDGIEHDGDGQWPFHTFVEQLIIDMFDPVWEVRHGSVMALREILAHQGASAGVFKPDSHMGGTLFIELEDKSIPSTVKREREIDLNMQVSADEFDSNFKRPKLEDVSSSTFVDSVMTCNNEGDIKISITSETHECDLTLDYGNGQFNGNSDDMDLESHSDGSRDACKESASIAEQKGHFDDNKIPSGNLITLRNLPQNCELMNSVKVARSSWLQNCEFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPTLVNETLNILLRMQCRPEWEIRHGSLLGIKYLVAVRQELLSDLLGRVLPACKSGLEDPDDDVRAVAADALIPAASAIVSLQGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEDMAPNMYEVFRLGDKEMENGGGGCGDGDGEENPYVLSTLAQRLWPFMRHSITSVRYSAIRTLERLLEAGYKRSMSELSGASFWPSSIFGDTLRIVFQNLLLETNEDILQCSERVWSLLIQCSMEDLEMAASSYVASWIELASTPFGSALDASKMYWPVAFPRKSQIRAAAKMRAAKIENECGVEFSLDSIKGTTAQDRNGDVPMNSVKIVVGADVDTSVTHTRVVTATALGYFASKLPVGSLKYVIDPLWSSLTSFSGVQRQVASMVLISWFKEIKVKNSSKNLDGIPGALKDWLLDLLACSDPAFPTKDSLLPYAELSRTYAKMRSEAGQLLNVVKSSGMFDELLTATQIELDRLSVDDAIGFASKIPALCNDSSANESLAKNIMDDIESFKQRLLTTSGYLKCVQSNLHVTVTSAVAAAVVWMSEFPTRLTPIILPLMASIRREQEEILQMKSAEALAELMYHCVARRPCPNDKLIKNICSLTCMDPSETPQAKSLCTIESIDDQGLLSFRTPVGKQKSKVHVLAGEDRSKVEGFLSRRGSELSLKLLCEKFGASLFDKLPKLWDCLTEVLKPLPVTEEKQVTASIESVSDPQTLINNVQVVRSVAPVLNEELKPKLLTLLPCIFKCVQHSHVAVRLAASRCITSLAQSMTVKVMGAVVENAIPMLEDSSSVYARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGLPQPIGLGEGVSRNAEDLQFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTVQASAIVASDIAEHRTTIGNEDLLASLIICPSTLVGHWAFEIEKYIDASVISSLQYVGSAQERMLLRDHFCKHNVIITSYDVVRKDVDFLAQLLWNYCILDEGHIIKNAKSKVTIAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQAGYGKPLLAARDPKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQYKLYEQFSGSRVKQEMSSIVTTNESAAPEGSGSSTKASSHVFQALQYLLKLCSHPLLVIGEKIPDSLFTILLELFPAGSDIVSELHKLHHSPKLVALHEILEECGIGVDNSGSEGAVNVGQHRVLIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVAPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASMNTMNTDQLLDLFASAETSKKGATAVKSSENNNDVDAKLVGSGKRLKSILGGLEELWDESQYTEEYNLSQFLARLNG* 2046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01136 2045 FunFam B-TFIID TATA-box-binding protein-associated factor 1 1419 1680 - -
Lapu11g01136 2045 Gene3D - 1196 1407 IPR011989 -
Lapu11g01136 2045 SMART helicmild6 1841 1927 IPR001650 -
Lapu11g01136 2045 Gene3D - 4 94 IPR011989 -
Lapu11g01136 2045 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1817 1975 IPR001650 -
Lapu11g01136 2045 SMART ultradead3 1445 1641 IPR014001 -
Lapu11g01136 2045 MobiDBLite consensus disorder prediction 251 269 - -
Lapu11g01136 2045 FunFam TATA-binding protein-associated factor BTAF1 1201 1407 - -
Lapu11g01136 2045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1432 1681 IPR027417 -
Lapu11g01136 2045 Pfam Helicase conserved C-terminal domain 1825 1927 IPR001650 -
Lapu11g01136 2045 Gene3D - 1691 2012 IPR027417 -
Lapu11g01136 2045 CDD SF2_C_SNF 1796 1938 - -
Lapu11g01136 2045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1682 1983 IPR027417 -
Lapu11g01136 2045 FunFam TATA-binding protein-associated factor BTAF1 508 688 - -
Lapu11g01136 2045 SUPERFAMILY ARM repeat 6 1488 IPR016024 -
Lapu11g01136 2045 Gene3D - 1421 1680 IPR038718 -
Lapu11g01136 2045 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1461 1631 IPR014001 -
Lapu11g01136 2045 FunFam TATA-binding protein-associated factor BTAF1 1 96 - -
Lapu11g01136 2045 MobiDBLite consensus disorder prediction 244 269 - -
Lapu11g01136 2045 Pfam SNF2-related domain 1467 1763 IPR000330 GO:0005524|GO:0140658
Lapu11g01136 2045 Pfam Domain of unknown function (DUF3535) 783 1237 IPR022707 -
Lapu11g01136 2045 FunFam TATA-binding protein-associated factor 172 1691 2008 - -
Lapu11g01136 2045 Gene3D - 498 675 IPR011989 -
Lapu11g01136 2045 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 4 2044 IPR044972 GO:0003677|GO:0016887|GO:0017025
Lapu11g01136 2045 CDD DEXHc_Mot1 1449 1681 IPR044078 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01136 Lapu-Chr11 13377253 13398676 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01136 1444 1982 RAD5 or RAD16-like Gene Family AT1G02670 25.667 1.57e-38 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu11g01136 DUF3535 2.6e-104 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01136 K15192 - gmx:100777977 3667.47