Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lapu11g01136 | ATGGCCCAGCAGTCATCTAGGCTCCAGCGTTTGCTTACTCTCCTGGACACTGGGTCAACCCAAGCTACAAGGTTGACCGCTGCTCGTCAGATAGGTGACATTGCAAAATCACACCCTCAAGACTTGACCAGTCTTCTCAAGAAGGTTTCTCAATATCTCCGCAGTAAAAATTGGGATACACGAGTTGCAGCTGCTCATGCAATTGGATCAATTGCTGAGAATGTTAAGCACATAAGTTTGACTGAACTTTTTGCTTCTATTGTATCAAAAATGAATGAGAATGGGATATCTTGTAGCATTGAGGATCTGTGTGCATGGCCGTATTTACAATCAAAAATTACTGGAAGCTCATTTAGAAGCTTTGATATGAACAAGGTGCTTGAATTTGGGGCCTTATTAGCATCAGGGGGTCAGGAATATGATATTGGAAACGATAATATAAAGAACCCAAAGGAGCGATTGGTTCGACAAAAGCAAAATCTTCGACGTCGTTTAGGTTTGGATGTCTGTGAACAATTTATGGATATCAGTGATGTAATAAGAGATGAAGATCTTATGGCATCCAAATCAGACTCACATCTGAACGGGATTGATCGTAGAGTTTTTACTTCTTGTTCTGCACATAACATCCAGAAAATGGTTGCAAACATGGTTCCTAGTGTGAAATCAAAGTGGCCCAGCGCAAGAGAATTGAATCTTTTAAAGCGTAAAGCAAAAATAAACTCAAAGGACCAAACAAAAAGCTGGTGTGAAGATGGTGGTACAGAGCCATCAGGTGCTCAAAGTTTGACTTCAAAAGGCACAGGTCCTGATTCACTGAATTACAGTAAGGTATTCATGGATGTTAATCATGATGACGATGGCATTGAGCATGATGGGGATGGGCAATGGCCTTTCCATACTTTTGTTGAGCAACTTATTATAGATATGTTTGATCCTGTTTGGGAGGTACGACATGGTAGTGTGATGGCACTGAGAGAGATTTTAGCACATCAAGGTGCTTCTGCTGGAGTATTTAAACCTGACTCACACATGGGTGGTACCTTGTTTATTGAATTAGAAGACAAAAGTATACCAAGCACAGTGAAGAGAGAGAGGGAAATTGATTTAAATATGCAAGTTTCAGCTGATGAGTTTGATTCAAACTTTAAGAGGCCAAAACTTGAAGATGTGTCATCATCAACCTTTGTGGATAGCGTGATGACTTGCAACAATGAAGGTGATATTAAAATCAGTATTACTTCTGAAACCCATGAATGCGATTTAACTTTGGATTACGGGAATGGGCAATTTAATGGTAATTCTGATGACATGGATCTGGAGTCTCACTCTGATGGCTCTCGTGATGCATGCAAAGAGTCTGCTAGCATAGCAGAACAGAAGGGTCATTTTGATGACAATAAGATTCCCTCTGGAAATCTTATTACACTGAGAAATCTTCCTCAGAACTGTGAGCTGATGAACTCTGTTAAAGTGGCTAGAAGTTCTTGGCTTCAAAACTGTGAATTTCTTCAAGATTGTGTGATACGCTTTTTGTGCGTGTTGTCACTTGATCGCTTTGGAGATTATGTATCTGATCAGGTTGTTGCTCCAGTGCGTGAAACCTGTGCACAGGCTTTAGGTGCTGCATTTAAGTATATGCATCCCACACTAGTAAATGAAACACTGAACATATTGTTGAGAATGCAGTGTAGGCCAGAATGGGAGATTCGTCATGGCAGTCTTCTTGGTATAAAATATTTGGTTGCTGTACGGCAGGAGTTGCTTTCCGATTTGCTTGGACGAGTTCTTCCTGCATGTAAATCTGGGTTGGAGGACCCAGATGATGATGTCCGGGCAGTTGCTGCTGATGCTTTAATACCAGCTGCATCTGCAATTGTTTCCTTGCAGGGTCAAACATTGCATTCAATTGTGATGCTTTTATGGGATATATTGCTTGATTTGGATGATTTAAGTCCGTCCACGAGCAGTGTAATGAATCTGCTGGCAGAAATCTATTCTCAAGAAGATATGGCACCAAATATGTATGAAGTTTTTAGATTGGGAGACAAGGAAATGGAAAACGGAGGAGGTGGTTGTGGTGATGGCGATGGAGAAGAAAATCCTTATGTGCTTTCAACATTGGCACAGCGATTGTGGCCCTTTATGAGGCATAGTATCACATCTGTTCGTTATTCTGCAATACGAACTTTGGAGAGGCTACTTGAAGCTGGATATAAAAGAAGCATGTCTGAGTTGTCTGGTGCTTCATTTTGGCCCTCTTCTATATTTGGAGATACACTTAGAATCGTCTTCCAGAATCTGCTATTGGAAACAAATGAGGATATTTTGCAATGTTCTGAGAGAGTTTGGAGTCTCCTTATTCAGTGTTCTATGGAGGACTTGGAGATGGCTGCGAGTTCTTATGTGGCTTCTTGGATAGAACTTGCATCTACACCATTTGGATCAGCATTAGATGCCTCAAAGATGTACTGGCCTGTTGCCTTTCCACGGAAAAGTCAAATTAGAGCAGCTGCTAAAATGAGAGCTGCAAAAATTGAAAATGAATGCGGTGTGGAATTTAGTCTTGATTCTATTAAAGGAACTACTGCACAAGATAGAAATGGAGATGTTCCTATGAATTCTGTTAAGATAGTCGTTGGTGCTGATGTGGACACGTCTGTAACTCATACCCGAGTAGTTACGGCAACTGCTTTGGGATATTTTGCTTCTAAGCTGCCAGTGGGTTCTTTAAAATATGTGATTGATCCACTGTGGAGCTCTCTAACCTCGTTCTCTGGTGTCCAACGACAGGTTGCATCTATGGTACTTATTTCTTGGTTCAAGGAGATTAAGGTCAAGAATTCGTCCAAAAACCTTGATGGTATCCCCGGTGCTCTGAAAGATTGGTTGCTGGACTTATTAGCATGTTCTGACCCAGCATTCCCGACAAAAGATTCACTTCTTCCTTATGCTGAGCTTTCCAGAACTTATGCAAAGATGCGGAGTGAGGCTGGTCAATTACTAAATGTAGTAAAATCTTCTGGTATGTTTGATGAGTTATTGACAGCAACTCAAATTGAGTTGGATCGCTTGAGTGTGGATGACGCCATTGGTTTTGCTTCAAAAATTCCAGCGTTGTGTAATGATAGTTCTGCAAATGAATCCTTGGCAAAGAACATCATGGATGATATAGAATCCTTCAAACAGAGACTCTTGACAACTTCTGGATATTTAAAATGTGTTCAGAGCAACTTGCATGTTACAGTCACATCTGCAGTTGCAGCTGCAGTTGTCTGGATGTCTGAATTTCCTACACGACTTACACCAATCATTTTGCCTTTGATGGCTTCCATCAGGCGAGAGCAGGAGGAAATACTACAAATGAAGTCTGCTGAGGCCCTTGCTGAGCTAATGTATCACTGTGTCGCACGGAGACCTTGCCCCAATGATAAATTAATCAAGAATATATGTAGTTTAACTTGCATGGATCCCTCTGAGACCCCTCAAGCAAAATCTCTTTGTACCATTGAGAGTATCGATGACCAAGGTCTGCTGTCTTTTAGAACTCCTGTGGGCAAACAGAAGTCAAAGGTCCATGTGCTGGCTGGTGAAGATCGTTCAAAGGTGGAGGGATTTTTAAGTAGACGTGGATCTGAGCTATCATTGAAGCTTCTATGTGAAAAGTTTGGTGCGTCATTATTTGATAAGCTTCCGAAGCTGTGGGATTGCCTTACTGAAGTTCTTAAACCTCTACCCGTCACTGAGGAAAAGCAAGTTACTGCATCTATTGAGTCTGTCAGTGATCCTCAGACCTTGATTAACAATGTCCAGGTGGTGCGCTCTGTTGCTCCCGTGTTAAATGAGGAGTTGAAACCAAAACTGTTGACGCTTCTTCCATGCATCTTCAAATGTGTTCAGCATTCTCATGTTGCTGTTAGATTAGCTGCTTCACGCTGCATCACATCTCTGGCACAGTCAATGACTGTGAAAGTCATGGGAGCTGTGGTTGAAAATGCTATCCCTATGTTAGAAGATTCATCATCTGTTTATGCTCGACAAGGAGCAGGCATGTTGATTAGTTTTCTTGTTCAGGGGCTGGGTGTAGAGTTGGTCCCTTATGCTCCTCTATTGGTAGTTCCACTTCTAAGGTGTATGAGTGATTGTGATCAGTCTGTCAGACAGAGTGTGACCCATAGTTTTGCTGCTCTTGTTCCTTTACTTCCTTTGGCACGAGGCCTTCCTCAGCCGATTGGACTAGGGGAAGGTGTATCCAGAAATGCAGAAGATTTGCAGTTTTTAGAGCAACTGCTTGACAACTCTCATATTGAAGATTACAAATTATGCACTGAATTGAAAGTAACATTGAGGAGGTATCAGCAAGAAGGCATTAATTGGTTAGCTTTTTTGAAACGTTTCAAGCTTCATGGAATTTTATGTGATGACATGGGACTTGGAAAGACAGTTCAAGCATCAGCAATTGTAGCCTCTGACATAGCTGAGCATCGGACTACAATTGGGAATGAGGATCTTCTGGCATCTTTAATTATCTGTCCATCAACTCTAGTTGGGCACTGGGCCTTTGAGATTGAGAAATATATTGATGCTTCTGTTATATCTAGTCTTCAATATGTTGGTTCTGCTCAGGAACGAATGCTTCTTCGAGATCATTTTTGTAAGCATAATGTCATTATAACATCATATGATGTTGTGCGTAAAGATGTTGATTTTCTGGCACAGCTGCTGTGGAATTACTGCATTTTAGATGAAGGGCATATAATAAAAAATGCGAAGTCTAAAGTTACAATTGCTGTAAAACAGTTGAAAGCCCAGCACCGCTTGATATTGAGTGGGACACCTATACAGAATAATATAATGGACTTGTGGTCCCTTTTTGATTTTCTGATGCCTGGATTTCTAGGAACTGAGAGACAGTTCCAAGCAGGATATGGAAAACCACTTTTAGCGGCAAGAGATCCAAAATGTTCTGCTAAGGATGCTGAAGCAGGAGTACTTGCTATGGAGGCATTGCATAAGCAGGTAATGCCTTTCCTCCTTCGTAGAACAAAGGATGAAGTCTTGTCTGATCTGCCAGAGAAAATAATTCAAGACAGATACTGTGATTTGAGCCCTGTACAGTATAAACTTTATGAACAGTTTTCTGGTTCTCGTGTAAAACAAGAAATGTCATCTATTGTAACAACGAATGAGTCTGCAGCACCAGAAGGAAGTGGCAGTTCTACTAAAGCGTCTTCACATGTTTTCCAGGCACTCCAATATTTGCTAAAACTCTGCAGTCATCCATTGCTTGTCATTGGTGAGAAGATTCCAGATTCACTTTTTACCATCCTCTTAGAACTGTTTCCTGCTGGCTCTGATATTGTTTCAGAACTTCACAAACTCCATCACTCCCCAAAATTAGTTGCTCTTCATGAGATTCTAGAAGAATGTGGAATTGGAGTTGATAATTCAGGTTCGGAGGGTGCAGTTAACGTTGGGCAGCATAGGGTCTTGATATTCGCTCAACATAAGGCTTTCCTGGATATAATTGAAAGAGATTTGTTTCAGACACACATGAAAAGTGTCACATATTTGCGGTTGGATGGATCAGTTGCCCCAGAAAAGCGTTTTGAAATTGTCAAAGCTTTCAATTCAGATCCTACCATTGATGTCTTACTGCTAACAACACATGTTGGTGGGCTTGGTTTGAACCTGACATCTGCAGATACCCTTGTCTTTGTGGAGCATGATTGGAATCCAATGCGAGACCATCAGGCTATGGATAGAGCACACAGGTTAGGTCAGAAAAAAGTAGTTAATGTCCATCGGCTAATAATGCGTGGTACTTTGGAAGAGAAAGTTATGAGTCTACAAAGATTCAAAGTGTCCGTGGCTAATGCTGTCATTAATGCTGAAAATGCTAGTATGAATACAATGAATACAGATCAGTTGCTTGATTTATTTGCATCAGCAGAAACTTCCAAAAAGGGTGCTACTGCTGTGAAGAGTTCAGAGAACAACAATGATGTAGACGCTAAATTAGTAGGCAGTGGGAAGAGATTGAAATCAATACTTGGCGGATTGGAGGAGCTATGGGACGAATCACAATATACAGAGGAGTACAATCTGAGTCAATTTTTAGCGAGGCTTAATGGCTAA | 6138 | 0.4115 | MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGDIAKSHPQDLTSLLKKVSQYLRSKNWDTRVAAAHAIGSIAENVKHISLTELFASIVSKMNENGISCSIEDLCAWPYLQSKITGSSFRSFDMNKVLEFGALLASGGQEYDIGNDNIKNPKERLVRQKQNLRRRLGLDVCEQFMDISDVIRDEDLMASKSDSHLNGIDRRVFTSCSAHNIQKMVANMVPSVKSKWPSARELNLLKRKAKINSKDQTKSWCEDGGTEPSGAQSLTSKGTGPDSLNYSKVFMDVNHDDDGIEHDGDGQWPFHTFVEQLIIDMFDPVWEVRHGSVMALREILAHQGASAGVFKPDSHMGGTLFIELEDKSIPSTVKREREIDLNMQVSADEFDSNFKRPKLEDVSSSTFVDSVMTCNNEGDIKISITSETHECDLTLDYGNGQFNGNSDDMDLESHSDGSRDACKESASIAEQKGHFDDNKIPSGNLITLRNLPQNCELMNSVKVARSSWLQNCEFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPTLVNETLNILLRMQCRPEWEIRHGSLLGIKYLVAVRQELLSDLLGRVLPACKSGLEDPDDDVRAVAADALIPAASAIVSLQGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEDMAPNMYEVFRLGDKEMENGGGGCGDGDGEENPYVLSTLAQRLWPFMRHSITSVRYSAIRTLERLLEAGYKRSMSELSGASFWPSSIFGDTLRIVFQNLLLETNEDILQCSERVWSLLIQCSMEDLEMAASSYVASWIELASTPFGSALDASKMYWPVAFPRKSQIRAAAKMRAAKIENECGVEFSLDSIKGTTAQDRNGDVPMNSVKIVVGADVDTSVTHTRVVTATALGYFASKLPVGSLKYVIDPLWSSLTSFSGVQRQVASMVLISWFKEIKVKNSSKNLDGIPGALKDWLLDLLACSDPAFPTKDSLLPYAELSRTYAKMRSEAGQLLNVVKSSGMFDELLTATQIELDRLSVDDAIGFASKIPALCNDSSANESLAKNIMDDIESFKQRLLTTSGYLKCVQSNLHVTVTSAVAAAVVWMSEFPTRLTPIILPLMASIRREQEEILQMKSAEALAELMYHCVARRPCPNDKLIKNICSLTCMDPSETPQAKSLCTIESIDDQGLLSFRTPVGKQKSKVHVLAGEDRSKVEGFLSRRGSELSLKLLCEKFGASLFDKLPKLWDCLTEVLKPLPVTEEKQVTASIESVSDPQTLINNVQVVRSVAPVLNEELKPKLLTLLPCIFKCVQHSHVAVRLAASRCITSLAQSMTVKVMGAVVENAIPMLEDSSSVYARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGLPQPIGLGEGVSRNAEDLQFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTVQASAIVASDIAEHRTTIGNEDLLASLIICPSTLVGHWAFEIEKYIDASVISSLQYVGSAQERMLLRDHFCKHNVIITSYDVVRKDVDFLAQLLWNYCILDEGHIIKNAKSKVTIAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQAGYGKPLLAARDPKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQYKLYEQFSGSRVKQEMSSIVTTNESAAPEGSGSSTKASSHVFQALQYLLKLCSHPLLVIGEKIPDSLFTILLELFPAGSDIVSELHKLHHSPKLVALHEILEECGIGVDNSGSEGAVNVGQHRVLIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVAPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASMNTMNTDQLLDLFASAETSKKGATAVKSSENNNDVDAKLVGSGKRLKSILGGLEELWDESQYTEEYNLSQFLARLNG* | 2046 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lapu11g01136 | 2045 | FunFam | B-TFIID TATA-box-binding protein-associated factor 1 | 1419 | 1680 | - | - | |
Lapu11g01136 | 2045 | Gene3D | - | 1196 | 1407 | IPR011989 | - | |
Lapu11g01136 | 2045 | SMART | helicmild6 | 1841 | 1927 | IPR001650 | - | |
Lapu11g01136 | 2045 | Gene3D | - | 4 | 94 | IPR011989 | - | |
Lapu11g01136 | 2045 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1817 | 1975 | IPR001650 | - | |
Lapu11g01136 | 2045 | SMART | ultradead3 | 1445 | 1641 | IPR014001 | - | |
Lapu11g01136 | 2045 | MobiDBLite | consensus disorder prediction | 251 | 269 | - | - | |
Lapu11g01136 | 2045 | FunFam | TATA-binding protein-associated factor BTAF1 | 1201 | 1407 | - | - | |
Lapu11g01136 | 2045 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1432 | 1681 | IPR027417 | - | |
Lapu11g01136 | 2045 | Pfam | Helicase conserved C-terminal domain | 1825 | 1927 | IPR001650 | - | |
Lapu11g01136 | 2045 | Gene3D | - | 1691 | 2012 | IPR027417 | - | |
Lapu11g01136 | 2045 | CDD | SF2_C_SNF | 1796 | 1938 | - | - | |
Lapu11g01136 | 2045 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1682 | 1983 | IPR027417 | - | |
Lapu11g01136 | 2045 | FunFam | TATA-binding protein-associated factor BTAF1 | 508 | 688 | - | - | |
Lapu11g01136 | 2045 | SUPERFAMILY | ARM repeat | 6 | 1488 | IPR016024 | - | |
Lapu11g01136 | 2045 | Gene3D | - | 1421 | 1680 | IPR038718 | - | |
Lapu11g01136 | 2045 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1461 | 1631 | IPR014001 | - | |
Lapu11g01136 | 2045 | FunFam | TATA-binding protein-associated factor BTAF1 | 1 | 96 | - | - | |
Lapu11g01136 | 2045 | MobiDBLite | consensus disorder prediction | 244 | 269 | - | - | |
Lapu11g01136 | 2045 | Pfam | SNF2-related domain | 1467 | 1763 | IPR000330 | GO:0005524|GO:0140658 | |
Lapu11g01136 | 2045 | Pfam | Domain of unknown function (DUF3535) | 783 | 1237 | IPR022707 | - | |
Lapu11g01136 | 2045 | FunFam | TATA-binding protein-associated factor 172 | 1691 | 2008 | - | - | |
Lapu11g01136 | 2045 | Gene3D | - | 498 | 675 | IPR011989 | - | |
Lapu11g01136 | 2045 | PANTHER | TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 | 4 | 2044 | IPR044972 | GO:0003677|GO:0016887|GO:0017025 | |
Lapu11g01136 | 2045 | CDD | DEXHc_Mot1 | 1449 | 1681 | IPR044078 | GO:0005524 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lapu11g01136 | Lapu-Chr11 | 13377253 | 13398676 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lapu11g01136 | 1444 | 1982 | RAD5 or RAD16-like Gene Family | AT1G02670 | 25.667 | 1.57e-38 | 153 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Lapu11g01136 | DUF3535 | 2.6e-104 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lapu11g01136 | K15192 | - | gmx:100777977 | 3667.47 |