Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01134 ATGGCACCTTTACTCCTTAATCGCTCCTTCTACTGCCACCTCTTCCTTCTCCTTTTCCTTTTTTGTCTTCCAACCACAAACACACTCTCCACTGTTTCTATTTCTCAACCCTCCAATTCAAACCAAACATTTATTTGCGTCTTGCAACATCCAAATCAACAAGGACAATCAAATCTCAACTGTACCAGCTTTCCTCAGCCTCGGGCTATTACACTTGATGTCAATCCTAATGTTTCCTACTCTCAGATTGTGGGCGGCAACGGCTTTCTGTGCGCCTTAGGGCCATCGTCTTCTTCCATCTCCATCATGGGCTGTTGGAGATTCTCTGCCAATGCTACTAATGTTCCCTATAAGCGCATCTACAGTGGACCCCTTCTCCAAGATATTGACAGTAGCCACTCCCACGTTTGCGGTCTTGTAAATAGCGGAAATAATGACAGTAGCCTTCGTCTTGAGTGTTGGCAATGGCATGACTTCAATTCGAGCAGTGGGAGTGTGAGGAACATGTCAATGTCAAGCATTGCCGTGGGAGAGAATTTTGTATGTGGCTTATCACTGAACGGGGATGTTAATTGCACAGGCACTGGGAGGGTTAATAGTAGTAGGGTTGTTGTTGATGTGCCTATGCCTGGTAAGAATTACACTTTTCTCGCCGCCGGCTTTAGGCATGCCTGTGTCCTCTCCGGTGACGGTGGTTTGGTTTGTTGGGGAGACATGGAGGGTGAGCAACCCCAAGGGAGTTCCCTGTTGCTAGTCGTGGCTTTCTTCCTTCACAGGTACTGCAACTCTAAACGCAGAGGAAGCCGTGTCCACGACTCTGGCCGCTTGGACGAGTCATCTCACTCTCAACCACAACCTGAAGCTGAAGCTGGATCTCGAGTTCTTCAGAAGCGCTTGAGCCACGTGATCAGCATGGGAAATGGAAGCCCTTTGGTGGAGTTTTCAATGGTGACACTGCTTGAAGTCACCAACAATTTCTGTGAGGACAACAGAGTTGGGAATGGCAGCTTCGGTTCGGTGTATCATGCCATTTTGGAGGACGGGAAGGAGGTTGCCATAAAAAGAGCCGAAGCCTCATCCTCCACCTACACAGTCTTGGGTGCCCAAGTGGACAAAGACAATGCGTTCGTGAATGAGCTTGAATCTCTCTCGAGACTCCACCACAAGAACCTGGTCCGCTTGGTGGGGTTCTATGAAGACACTAAAGAACGCATTTTGGTGTACGAGTACATGGACAATGGGAGCCTCAGTGACCATCTCCACAAGCTCCAAACTTCAGCCCTCATGTCATGGCCGGTGCGCATCAAGGTGGCTCTGGATGCTGCCAGAGGCATAGAGTACTTGCACCAATACGCCACTCCTCCAATCATTCACCGTGACATCAAGTCTGCCAACATACTGTTGGATGCCAAGTGGACTGCCAAAGTCTCTGATTTTGGACTCTCCCTAATGGGACCTGACCCGGAAGATGAGGAGGCCCACCTTTCACTTCTGGCAGCCGGCACTGTTGGCTACATGGACCCTGAATACTACAGGCTTCAACATTTGACCCCCAAGAGTGACGTCTACAGCTTTGGCGTGGTTTTGCTAGAGTTGCTCTCCGGCCACAAGGCCATCCATAAAAACGAGAATGGGGTGCCAAGAAATGTGGTTGATTTTGTGGTGCCATTCATTGTTCAAGATGAGATTCACAGAGTGTTGGACAGAAGAGTGCCGCCTCCCACGCCGTTTGAGATAGAGGCCGTGGCGTATGTGGGCTATTTGGCAGCAGATTGTGTGAGGTTGGAAGGTCGAGACAGACCAACCATGTCTCAAGTTGTAAATAACTTGGAAAGAGCATTGGCTGCATGTTTAGCCCAACCAATACTCTCCAGGTCCACCACTCACTCTTCACAATCACAATAG 1905 0.494 MAPLLLNRSFYCHLFLLLFLFCLPTTNTLSTVSISQPSNSNQTFICVLQHPNQQGQSNLNCTSFPQPRAITLDVNPNVSYSQIVGGNGFLCALGPSSSSISIMGCWRFSANATNVPYKRIYSGPLLQDIDSSHSHVCGLVNSGNNDSSLRLECWQWHDFNSSSGSVRNMSMSSIAVGENFVCGLSLNGDVNCTGTGRVNSSRVVVDVPMPGKNYTFLAAGFRHACVLSGDGGLVCWGDMEGEQPQGSSLLLVVAFFLHRYCNSKRRGSRVHDSGRLDESSHSQPQPEAEAGSRVLQKRLSHVISMGNGSPLVEFSMVTLLEVTNNFCEDNRVGNGSFGSVYHAILEDGKEVAIKRAEASSSTYTVLGAQVDKDNAFVNELESLSRLHHKNLVRLVGFYEDTKERILVYEYMDNGSLSDHLHKLQTSALMSWPVRIKVALDAARGIEYLHQYATPPIIHRDIKSANILLDAKWTAKVSDFGLSLMGPDPEDEEAHLSLLAAGTVGYMDPEYYRLQHLTPKSDVYSFGVVLLELLSGHKAIHKNENGVPRNVVDFVVPFIVQDEIHRVLDRRVPPPTPFEIEAVAYVGYLAADCVRLEGRDRPTMSQVVNNLERALAACLAQPILSRSTTHSSQSQ* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01134 634 MobiDBLite consensus disorder prediction 267 291 - -
Lapu11g01134 634 Gene3D Transferase(Phosphotransferase) domain 1 411 621 - -
Lapu11g01134 634 SMART serkin_6 326 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g01134 634 Pfam Regulator of chromosome condensation (RCC1) repeat 217 238 - -
Lapu11g01134 634 CDD STKc_IRAK 332 612 - -
Lapu11g01134 634 Gene3D Phosphorylase Kinase; domain 1 288 410 - -
Lapu11g01134 634 FunFam Serine/threonine-protein kinase-like protein CCR4 411 629 - -
Lapu11g01134 634 SUPERFAMILY Protein kinase-like (PK-like) 301 610 IPR011009 -
Lapu11g01134 634 ProSiteProfiles Protein kinase domain profile. 326 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g01134 634 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524
Lapu11g01134 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Lapu11g01134 634 Gene3D - 34 249 IPR009091 -
Lapu11g01134 634 Pfam Protein kinase domain 329 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu11g01134 634 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 109 624 IPR044815 GO:0004674
Lapu11g01134 634 SUPERFAMILY RCC1/BLIP-II 52 239 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01134 Lapu-Chr11 13369591 13372006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01134 248 629 Receptor kinase-like Gene Family AT5G47850 60.668 7.74e-152 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Lapu11g01134 Pkinase 3.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01134 - - pvu:PHAVU_011G003100g 716.457