Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01132 ATGACTCCAGTTAATTTGGCGGGCCAGTTTGGTGACACCACATACACTAAGGTCTTTGTTGGAGGCCTGGCCTGGGAGACTCAAAAGGAGACCATGAAGAAGTATTTTGAGCAATTTGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAAGCCACTGGAAGATCTAAAGGCTATGGATTTGTTACATTTCGCGAACCAGAAGCTGCCATGAGAGCTTGTGTAGATGCTGCTCCTGTAATCGACGGTAGGAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCTTCAACCCCAAAGCATGTGAGTGTATTGATAAAGTTTGGTGAAACGATATTGGCAGGAGGAGGAGGGAGGAACTTCAGAGTAATGGGATCTTTCCAGACAGGATTTGGAGGGGGAGTGGGATCGGCTTTTCCTTCAGCAGCAACCTTCCCTCATTATGCCATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTCCTTACTCGCCGGATTACACTTACCCTACGAGCTACTATGGTGTGTACGGAGGAGCAACAGCTCAGTACCCAGTTTATGGAAGCGGGCCAGGGGGGATGATGACGGGTGCTGCAGCGTTCTACCCATATCTGCAGTACAGCGGAGAAGGGAGTGGCGGCGGTGGCACAAGCGGAGGCTATAGTTCCGGGCAGGGTTACGGTGTGAACTATCCCCCTCACCTCTTTCAATATTCTCCGATTGCTTCCACTGCAGCAGGTGCCTATGCCCAGCACTACGGAACACCCATATCTCTAGCTCCTTCCCCTGCCTTGCAATCAGTGTGTTTCGCTGTGCCGCAGGCGTGA 843 0.5089 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHVSVLIKFGETILAGGGGRNFRVMGSFQTGFGGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYGVYGGATAQYPVYGSGPGGMMTGAAAFYPYLQYSGEGSGGGGTSGGYSSGQGYGVNYPPHLFQYSPIASTAAGAYAQHYGTPISLAPSPALQSVCFAVPQA* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01132 280 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
Lapu11g01132 280 SMART rrm1_1 17 89 IPR000504 GO:0003723
Lapu11g01132 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Lapu11g01132 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Lapu11g01132 280 Gene3D - 10 97 IPR012677 -
Lapu11g01132 280 SUPERFAMILY RNA-binding domain, RBD 15 103 IPR035979 GO:0003676
Lapu11g01132 280 PANTHER BOULE-RELATED 6 252 - -
Lapu11g01132 280 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01132 Lapu-Chr11 13349496 13355760 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01132 12 208 C2H2 Transcription Factor Family AT2G19380 30.500 3.34e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01132 - - gmx:100779046 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g01132 11 13349496 13355760 Lapu11g01132 11 13349496 13355760 ECH