Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01128 ATGGGGTTAAGAAGTTGCGAAGAAGGGAGTGGAAAGTTAGTTGACAAAATGAACAGAGATAAAGGATGGTGGTGCATCACTGAAGAACAAGGCAAAGGGGGCTGGAGGAAGCGCGGGCGTCACCCGGAAACCGCATTCCGAGGAGTGCGGAAACGCAGCTGGGGACGTTACGTCTCCGAGATAAGGTTGCCCGGCCAGAAAACCCGGATATGGCTTGGCTCCTTCGCCTCGCCTGAGATGGCGGCCAGGGCCCATGACTCCGCCGCTTTCTTCCTCAAAGGAACCTCTGCCACCCTCAACTTCCCCGACCTCGTCCACTCCCTTCCTCGCCCTCTCTCCTCCTCCCGGAGAGACATACAATCCGCGGCCGCTAAAGCCGCTCTCCACCCTCCTTCTATCAATTCCAAAACGGACAGTGATGGGTGGTGGGAGCCTTTTGGAGACGAATCCAACATTCTCAGCACTTCGTTTGAGGATGTGAAGGAGGCCCCTCTCATGAGCCCTCTCAGAGTGGACTCCGCTTTTGGAGACTTCTCATGGAACCAACTCCTCCATTTCCACCATGATGACCTTCTCATGTCATGA 585 0.5556 MGLRSCEEGSGKLVDKMNRDKGWWCITEEQGKGGWRKRGRHPETAFRGVRKRSWGRYVSEIRLPGQKTRIWLGSFASPEMAARAHDSAAFFLKGTSATLNFPDLVHSLPRPLSSSRRDIQSAAAKAALHPPSINSKTDSDGWWEPFGDESNILSTSFEDVKEAPLMSPLRVDSAFGDFSWNQLLHFHHDDLLMS* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01128 194 CDD AP2 46 104 IPR001471 GO:0003700|GO:0006355
Lapu11g01128 194 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Lapu11g01128 194 FunFam Ethylene-responsive transcription factor 2 44 103 - -
Lapu11g01128 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 39 137 - -
Lapu11g01128 194 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Lapu11g01128 194 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
Lapu11g01128 194 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Lapu11g01128 194 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Lapu11g01128 194 SUPERFAMILY DNA-binding domain 45 103 IPR016177 GO:0003677
Lapu11g01128 194 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01128 Lapu-Chr11 13332508 13333466 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01128 27 127 AP2-EREBP Transcription Factor Family AT5G25810 63.366 3.12e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu11g01128 AP2 7.7e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01128 K09286 - gmx:100783790 207.223