Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01125 ATGGTGGTCAACGAGAGACCATCCAAGAGGATGAAGAGGAGGGTCACAGCTGATCTTTATGATTTTCTCACGTTTCCAGCCACCGTCCACGCCTCCTCCGACCAACCCTTCCGGACCTGTGTCCAACGCTTCCTCTCAGACCACGCACGTATCACTTTCCCCCCTTCCTTATTTCCTTCTCTTATGACGTGGCAGATCTTGTTCCGTGTCGGTGACCTTGTCGACGGACCCGATCTCTCGCCTGCGGTGGTCACTCTTGACATTGTTGAGGAGGATGTCACTCGTTCTCGCTCTTCTGTGTATTGTGACCAGTGCCGAGTCGTTGGGTGGAGTGGGCATCCGGTATGTCGAAAGCGATACCATTTCATTATAAGAGCTGCGAGTAATGCAGTCGAACCATACCAAAGACCTTGTTCAAGATGTGGAAACCTTCTCCAATTATCTGAAACAAGGTGTAAATCGTGTAACTTTGCCATCACCGTTGATGACCTTGAGGACTGGGTGTATATGCAGATTGAAGATAACACCCATCTTCTGCACGGTGTGGTCCATGCCAATGGTTATGGTCACCTGCTTACTCTTAGTGGAAGAGAAGGTGGCTCGAAGCTTCTATCTGGATCTGATATTATGGATTTCTGGGACAGGCTGTGCACTTCAATTTCTGTTAGGAAGGTTAGCGTGATGGACTTGTCCAAGAAATTTGGGCTGGAATACCGTTTGCTTCATGCAATCACCAAAGGACATTCCTGGTATGGCAATTGGGCTTATGAATTTGGAACAGGCAGCTATGCTCTCACCCAAGATGCCTACAAGAAGGCGGTAAATACCCTTTCAAGTATGCCTTTGTCGTCATTTTCATTCCATGGTAGGGGACCTCGAAGCCGCCTGGAGAGTGTCATTTCTCTTTACCAGTCTTTGGCAGAAACTGAACTTCTGAACATTCAAGATCTCTTCTCCTTTTTGTTGACATTGATTCGTGAATCTCGTAAGCCAATTGCCATGAGAACATTTAAGCAGACCAGTAATTTGTTGTGTACTTGGACGGGAAATGGTGTTGAAGAGGTGCAACAGGCTTTGGTCAAGGTATTGCTTGCATCGGGTGCTTGTGCGGAGTCCAAATGGGTTACAAGACGTGCTCTCAAGGGTGCAGTATGCAGGGGTGTTTCATCTCCAGAGCTTCTTGACTACTCTCTGAAGCACTTGCCTGGGAAATTAGCTGCTAATGGGATGATAGTTTGTTCACGATGCAATCCCATTTCCAGTGCCATCGAATTTAGGTTGGGACATATGAGTAATGGATTAAATACAAATTCAAGCTATCCTACAGAAGAGCAACTGATCTCTGATATGACATTTTTATTTGATTCAATAATTCATCCTGACAAAATGGTGTCCTATAGACCAAGGATTATGAGGAAAAGGGTTGCCGATTCAGCCAGGAAGCTCCTTGACTGTAAACAATTTATGAAGGATTACAAGCCGTATGAAAAAGTCACCGAACTGCCTTCTGTCATTAGGTTGTGGTGTCATGTGGAGCTTTCTGATCAGCCTAAGGATGATCCATCCCCACCACCAGAGCTGATTGTGTTGCCTTTGAATGCTACCGTTGCCGAACTCAAGAGCGAAGCCACTGGGGCTTTTCAAGAGGTGTATGCAATGTATAAGAGGTTTCAAGCTGAAGAACTACTGGGATATGGGTCAATCAGTGATTCGCTCACCGTAAAGTTATTGCTGGGAACAAGTGGATCAGTCCGAATTCAAGGTAAGTGCCCGGCCAAACATGGGCTAAGCAGATTCCGAATGGAACGAGGAACTGAGGCGTGGAAGGTTGATTGCACTTGTGGGGCTAAGGATGATGATGGAGAGAAAATGCTAGCTTGTGATACCTGTGGCGTTTGGCAGCATACCAGATGCGCTGGAATTGATAAATCTGATGGCATGCCTTCTAAGTTTGTTTGCATGAGGTGTGTCAACTTGTACCGTGAGGAAACTAAAAAATCACCGGCATCTGATGAGGAATCTAAAGGGACGTGTAAATTCAACACATCTTGCAGAGACGAGGCAGTAGCAAGGGACTGTCCAACAGTTTCATGTAACATAACTGTGGATTTTGGTGTACGTTGA 2124 0.4609 MVVNERPSKRMKRRVTADLYDFLTFPATVHASSDQPFRTCVQRFLSDHARITFPPSLFPSLMTWQILFRVGDLVDGPDLSPAVVTLDIVEEDVTRSRSSVYCDQCRVVGWSGHPVCRKRYHFIIRAASNAVEPYQRPCSRCGNLLQLSETRCKSCNFAITVDDLEDWVYMQIEDNTHLLHGVVHANGYGHLLTLSGREGGSKLLSGSDIMDFWDRLCTSISVRKVSVMDLSKKFGLEYRLLHAITKGHSWYGNWAYEFGTGSYALTQDAYKKAVNTLSSMPLSSFSFHGRGPRSRLESVISLYQSLAETELLNIQDLFSFLLTLIRESRKPIAMRTFKQTSNLLCTWTGNGVEEVQQALVKVLLASGACAESKWVTRRALKGAVCRGVSSPELLDYSLKHLPGKLAANGMIVCSRCNPISSAIEFRLGHMSNGLNTNSSYPTEEQLISDMTFLFDSIIHPDKMVSYRPRIMRKRVADSARKLLDCKQFMKDYKPYEKVTELPSVIRLWCHVELSDQPKDDPSPPPELIVLPLNATVAELKSEATGAFQEVYAMYKRFQAEELLGYGSISDSLTVKLLLGTSGSVRIQGKCPAKHGLSRFRMERGTEAWKVDCTCGAKDDDGEKMLACDTCGVWQHTRCAGIDKSDGMPSKFVCMRCVNLYREETKKSPASDEESKGTCKFNTSCRDEAVARDCPTVSCNITVDFGVR* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01125 707 ProSitePatterns Uncharacterized protein family UPF0054 signature. 180 190 IPR020549 -
Lapu11g01125 707 ProSitePatterns Zinc finger PHD-type signature. 612 656 IPR019786 -
Lapu11g01125 707 SUPERFAMILY FYVE/PHD zinc finger 601 658 IPR011011 -
Lapu11g01125 707 SMART PHD_3 611 657 IPR001965 -
Lapu11g01125 707 Pfam PHD-finger 612 658 IPR019787 -
Lapu11g01125 707 CDD PHD_MMD1_like 611 656 - -
Lapu11g01125 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 597 661 IPR013083 -
Lapu11g01125 707 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01125 Lapu-Chr11 13309328 13312154 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01125 80 656 PHD Transcription Factor Family AT5G22260 28.780 4.41e-86 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lapu11g01125 PHD 1.6e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01125 K26271 - gmx:100780558 1268.45