Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01109 ATGGATACTTTCACTCATGTCCCCCCCGGTTTTAGGTTCCATCCTACGGATGAAGAACTTGTTGATTACTACCTTAGGAAGAAAGTGGCTTCAAGGAGGATTGACCTGGATGTCATAAAAGATGTTGACCTCTACAAAATTGAGCCATGGGATCTTCAAGAGATTTGCAGAATAGGAACGGAAGAGCAAAATGAATGGTACTTCTTTAGCCATAAAGATAAGAAGTATCCAACTGGAACTCGCACAAATAGAGCAACTGCAGCAGGGTTTTGGAAAGCAACTGGAAGAGACAAAGCAATCTATTCCAAGCATGACCTGATAGGCATGAGGAAAACCTTAGTCTTTTATAAAGGTCGAGCTCCAAATGGACTAAAGTCAGATTGGATAATGCATGAATATCGGCTTGAAACAGATGAAAATGGCACTCCACAGGCAAAGCAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAGAAGAGAGTAACAACGATGCGTAAAGTGAGTGAGCAGGACTCCCCCTGTTGGTATGATGAGCAAGTATCTTTCGTTCAAGACATGGACTCACCGAAGCAGACCTCTCAATCTAATTTGGTTTACCAGCTTCCGTATCCTTGCAAGAAAGAGCTAGATTTGCCCTACCAGGTGCCTCGCGACCACTTCCTCCAGCTTCCACTTCTAGAGAGCCCAAAACTGCTTCAATCTGCTTCAGCCATAACCCCTAATCCCATGACACCATATCTTCCAGATCATGTCAGCCACTCCACTACTCTACTTCCCTCATTACTCCTACAAGAAGAACATGTCATTGGTCAGCAAATAAACTTTCAGGCAACTTATTGTAGCAACAACAGCAACTCCTATGAACAAGCAATGGATCAAGTAACTGATTGGCGAGTGCTTGACAAGTTTGTTGCTTCACAACTCAGTCAAGATGCTTCCAAAGACAATACCTACTCAAACACCACAGCCAACATCTTTCACGGCACGGACAATGGCAATTGCAATGTACAATTCAGACATTTGGACAAACAAGAGATAGTGGTGCCTCAAGAAAAGGCCTCAACATCAAACCCCAGCTGCCCAATAGCATTGTGGAAATAA 1101 0.4351 MDTFTHVPPGFRFHPTDEELVDYYLRKKVASRRIDLDVIKDVDLYKIEPWDLQEICRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGLKSDWIMHEYRLETDENGTPQAKQEEGWVVCRVFKKRVTTMRKVSEQDSPCWYDEQVSFVQDMDSPKQTSQSNLVYQLPYPCKKELDLPYQVPRDHFLQLPLLESPKLLQSASAITPNPMTPYLPDHVSHSTTLLPSLLLQEEHVIGQQINFQATYCSNNSNSYEQAMDQVTDWRVLDKFVASQLSQDASKDNTYSNTTANIFHGTDNGNCNVQFRHLDKQEIVVPQEKASTSNPSCPIALWK* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01109 366 ProSiteProfiles NAC domain profile. 7 159 IPR003441 GO:0003677|GO:0006355
Lapu11g01109 366 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 281 - -
Lapu11g01109 366 Gene3D NAC domain 16 162 IPR036093 GO:0003677|GO:0006355
Lapu11g01109 366 FunFam NAC domain-containing protein 16 163 - -
Lapu11g01109 366 SUPERFAMILY NAC domain 5 159 IPR036093 GO:0003677|GO:0006355
Lapu11g01109 366 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01109 Lapu-Chr11 13205554 13208844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01109 1 366 NAC Transcription Factor Family AT1G12260 54.278 2.00e-128 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu11g01109 NAM 9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01109 - - gmx:100809525 591.652