LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu11g01108	ATGGCTCGCGGAAAAGTTCAGCTGAAGAGAATTGAGAACCCAGTGCACAGACAAGTCACCTTCTGCAAGCGCCGAGCTGGGCTTCTTAAGAAGGCTAAGGAGCTCTCTGTGCTGTGCGATGCTGAAATTGGCCTTTTCATTTTCTCCGCCCATGGAAAGCTCTATGAACTAGCCACCAAAGGAACCATGCAAGGCCTGATTGAGAGGTACACGAAGTTCACACGAGGGGCTCACCCTGAAGCACCACCCGAACCACTTCCTCTGGATGCAAAAGAGGAATCTAACATGCTAAAACAAGAAATCCAAACATTGCAAAAGAGTATCAGGTATTTGTTTGGAGGTGGAAACAAGAGTACGACAATGGATGAACTAGAAGTGCTAGAGAAGAATCTGGAAACTTGGATATATCATATTCGCTCAATGAAGACCAACATCATGTTACAAGAAATCGAAGCATTGAAAGATAAGGAGGGATCACTTAAAGCAGAAAATAAATATCTCCATGATCAGATTGTGGAGAATACTGCAATCCATAGCTTTACACAATTTGCTGCTGATGCTCCCTACCCACTCGTTATACAAGATGGGAGTTTTCAACTCTATTAA	606	0.4356	MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELATKGTMQGLIERYTKFTRGAHPEAPPEPLPLDAKEESNMLKQEIQTLQKSIRYLFGGGNKSTTMDELEVLEKNLETWIYHIRSMKTNIMLQEIEALKDKEGSLKAENKYLHDQIVENTAIHSFTQFAADAPYPLVIQDGSFQLY*	202

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu11g01108	201	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Lapu11g01108	201	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Lapu11g01108	201	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Lapu11g01108	201	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	56	IPR002100	GO:0003677\|GO:0046983
	Lapu11g01108	201	Gene3D	-	15	77	IPR036879	GO:0003677\|GO:0046983
	Lapu11g01108	201	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	147	-	-
	Lapu11g01108	201	ProSiteProfiles	K-box domain profile.	87	177	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Lapu11g01108	201	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Lapu11g01108	201	CDD	MADS_MEF2_like	2	78	IPR033896	GO:0000977\|GO:0045944
	Lapu11g01108	201	Pfam	K-box region	91	171	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Lapu11g01108	201	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Lapu11g01108	201	SUPERFAMILY	SRF-like	1	74	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu11g01108	Lapu-Chr11	13187931	13198748	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu11g01108	1	200	MADS-box Gene Family	AT1G71692	56.398	6.96e-72	215

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Lapu11g01108		K-box	3.9e-21	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu11g01108	-		-	gmx:100783345	330.872