Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g01106 ATGGACTTGAAGTCGAATCATACTCCTGTTCTCACTGATTCTGCACCCGTAACAAAGTCTAGGCTGTGTGTGCGTTCCAGTTTGTTGCCGTACTCCCATTCAGGGGCTACCTTTACGCATGGAATGTTATTGACTATCCCGAGGAAGAAGACAGGAATTCTTGGAGATGTTCGTTCTAGTGGTTGGTTGGATGCCATGAAATCATCTTCACCTCCAGCCAGGAAGATAACAAAGGATGTTTGCCATGGGTTTGCATCATCTGACTCTGATACTGCTGGTGCTTATTTTAGCTGGCTGCTAAAATACCCATCTGCACTTACGTGTTTTGATCAAATCACAAACTTTGCAAAGGGGAAAAGAATTGCGTTGTTTATGGATTATGATGGAACTCTTTCCCCAATTGTGGATAATCCTGACTGTGCGTTCATGTCCGACAATATGCGTGCTGCTGTTAAAAAGGTGGCAGAATATTTTCCAACAGCAATAATTAGTGGAAGAAGTCGTGACAAGGTATATCAATTTGTAGGACTAACAGAACTCTACTACGCTGGTAGTCACGGGATGGACATCATTGGCCCTGTTAGACAATCTGTATCTGATAATCACCCAAATTGCATTAAGTCTACAGACAAGCAGGGTAAGGAAGTTAATTTATTCCAACCTGCTGCTGAATTTCTTCCCATGATTAATGAGGTCCTTAAGTCTCTCGATGAGTGTACGAAAGACATTAAAGGTGCTAAAGTTGAGAACAATAAATTTTGTGTATCTGTGCATTACCGGAATGTTGATGAAAAGTATTGGGATTTGGTGGGGCAACGTGTTCATGATGTTCTGAAGGGCTGTCCGCGTTTGCGCTTAACTCATGGGCGGAAGGTTTTAGAGATCCGACCTGTGATTAACTGGGATAAGGGAAAAGCTGTCACGTTTTTACTTGAATCACTTGGGCTAAACAATTGTGATGATGTGCTTCCTATATATATTGGAGATGATCGGACTGACGAAGATGCATTTAAGGTTTTGAGAGAGGGGAATAGAGGTTATGGGATCTTGGTGTCTTCATCACCAAAAGAAAGCAACGCAGTTTACTCTCTTCGTGATCCATCAGAGGTCATGGAATTTCTCAAGTCACTTGTGTTATGGAAGTCAAGCTCTTTAAAAAGTCTTATATAG 1170 0.4179 MDLKSNHTPVLTDSAPVTKSRLCVRSSLLPYSHSGATFTHGMLLTIPRKKTGILGDVRSSGWLDAMKSSSPPARKITKDVCHGFASSDSDTAGAYFSWLLKYPSALTCFDQITNFAKGKRIALFMDYDGTLSPIVDNPDCAFMSDNMRAAVKKVAEYFPTAIISGRSRDKVYQFVGLTELYYAGSHGMDIIGPVRQSVSDNHPNCIKSTDKQGKEVNLFQPAAEFLPMINEVLKSLDECTKDIKGAKVENNKFCVSVHYRNVDEKYWDLVGQRVHDVLKGCPRLRLTHGRKVLEIRPVINWDKGKAVTFLLESLGLNNCDDVLPIYIGDDRTDEDAFKVLREGNRGYGILVSSSPKESNAVYSLRDPSEVMEFLKSLVLWKSSSLKSLI* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g01106 389 NCBIfam HAD-IIB family hydrolase 123 341 IPR006379 -
Lapu11g01106 389 FunFam Trehalose 6-phosphate phosphatase 222 298 - -
Lapu11g01106 389 Pfam Trehalose-phosphatase 124 368 IPR003337 GO:0003824|GO:0005992
Lapu11g01106 389 CDD HAD_TPP 122 372 - -
Lapu11g01106 389 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 29 385 IPR044651 GO:0004805|GO:0005992
Lapu11g01106 389 FunFam Trehalose 6-phosphate phosphatase 228 387 - -
Lapu11g01106 389 SUPERFAMILY HAD-like 122 380 IPR036412 -
Lapu11g01106 389 Gene3D - 218 387 IPR023214 -
Lapu11g01106 389 Gene3D - 121 215 IPR023214 -
Lapu11g01106 389 FunFam Trehalose 6-phosphate phosphatase 121 211 - -
Lapu11g01106 389 NCBIfam trehalose-phosphatase 118 378 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g01106 Lapu-Chr11 13173493 13179724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g01106 115 377 Trehalose Biosynthesis Gene Families AT1G70290 26.071 6.60e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g01106 K01087 - gmx:100819495 717.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g01106 11 13173493 13179724 Lapu11g01106 11 13173493 13179724 ECH